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Aliases for LINC01465 Gene

Subcategory (RNA class) for LINC01465 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01465 Gene

  • Long Intergenic Non-Protein Coding RNA 1465 2 3 5
  • C12orf61 3 4
  • Putative Uncharacterized Protein C12orf61 3
  • Chromosome 12 Open Reading Frame 61 2

External Ids for LINC01465 Gene

Previous HGNC Symbols for LINC01465 Gene

  • C12orf61

Summaries for LINC01465 Gene

GeneCards Summary for LINC01465 Gene

LINC01465 (Long Intergenic Non-Protein Coding RNA 1465) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01465 Gene

Genomics for LINC01465 Gene

Regulatory Elements for LINC01465 Gene

Enhancers for LINC01465 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F062783 1.4 FANTOM5 Ensembl ENCODE 20.4 -182.7 -182659 4.9 TBP TAF1 JUN SIN3A RFX5 POLR2A FOS TCF7L2 BHLHE40 CEBPB LINC01465 MIRLET7I DPY19L2 GC12M062761 LOC105369795
GH12F062701 1.4 FANTOM5 Ensembl ENCODE 12.1 -99.6 -99611 3.4 ESRRA TFAP4 TEAD4 ZNF384 CEBPG ZIC2 ZNF644 RARA FOS TCF7L2 LINC01465 USP15 RPL32P26 GAPDHP44
GH12F062631 1.5 FANTOM5 Ensembl ENCODE 11.1 -28.5 -28546 2.2 ARID4B DMAP1 ZSCAN9 RAD21 YY1 GLIS2 EGR1 SCRT2 EGR2 TSHZ1 MIRLET7I LINC01465 USP15 GC12P062638 ENSG00000275180
GH12F062601 1.5 FANTOM5 ENCODE 10.9 +0.2 154 4.5 HDGF PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ENSG00000257354 LINC01465 MIR6125 USP15 FAM19A2 GC12P062607
GH12F062817 1.5 FANTOM5 Ensembl ENCODE 10.2 -214.4 -214396 1.2 INSM2 ZNF76 FEZF1 ZNF2 ZNF121 ZNF366 ZNF391 ZNF202 ZNF263 REST ENSG00000257354 RNU1-83P LINC01465 MIR6125 ENSG00000257568 PPM1H LOC105369795 GC12M062761
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01465 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01465 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000173363 -210 4201 HDGF PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2

Genomic Location for LINC01465 Gene

Chromosome:
12
Start:
62,601,751 bp from pter
End:
62,603,690 bp from pter
Size:
1,940 bases
Orientation:
Minus strand

Genomic View for LINC01465 Gene

Genes around LINC01465 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01465 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01465 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01465 Gene

Proteins for LINC01465 Gene

  • Protein details for LINC01465 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7H1-CL061_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01465
    Protein Accession:
    Q8N7H1
    Secondary Accessions:
    • B2RMN9
    • Q3ZCV4

    Protein attributes for LINC01465 Gene

    Size:
    131 amino acids
    Molecular mass:
    13435 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01465 Gene

Post-translational modifications for LINC01465 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01465 Gene

Domains & Families for LINC01465 Gene

Protein Domains for LINC01465 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01465: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01465 Gene

Function for LINC01465 Gene

genes like me logo Genes that share phenotypes with LINC01465: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01465 Gene

Localization for LINC01465 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01465 gene
Compartment Confidence
extracellular 2
mitochondrion 1
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LINC01465 Gene

Pathways & Interactions for LINC01465 Gene

SuperPathways for LINC01465 Gene

No Data Available

Interacting Proteins for LINC01465 Gene

Gene Ontology (GO) - Biological Process for LINC01465 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01465 Gene

Transcripts for LINC01465 Gene

mRNA/cDNA for LINC01465 Gene

(1) REFSEQ mRNAs :
(7) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01465 Gene

No ASD Table

Relevant External Links for LINC01465 Gene

GeneLoc Exon Structure for
LINC01465
ECgene alternative splicing isoforms for
LINC01465

Expression for LINC01465 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01465 Gene

Protein differential expression in normal tissues from HIPED for LINC01465 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC01465 Gene



Protein tissue co-expression partners for LINC01465 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of LINC01465 Gene:

LINC01465
genes like me logo Genes that share expression patterns with LINC01465: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for LINC01465 Gene

Orthologs for LINC01465 Gene

Evolution for LINC01465 Gene

ENSEMBL:
Gene Tree for LINC01465 (if available)
TreeFam:
Gene Tree for LINC01465 (if available)

No data available for Orthologs for LINC01465 Gene

Paralogs for LINC01465 Gene

No data available for Paralogs for LINC01465 Gene

Variants for LINC01465 Gene

Sequence variations from dbSNP and Humsavar for LINC01465 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10877885 -- 62,602,204(+) CAAGC(C/T)CTAAC nc-transcript-variant, upstream-variant-2KB
rs10877886 -- 62,602,281(+) CGTAA(A/G)TTGTC nc-transcript-variant, upstream-variant-2KB
rs10877887 -- 62,603,400(+) CTCTC(C/T)CCGCA nc-transcript-variant, upstream-variant-2KB
rs10877888 -- 62,605,374(+) AAATT(C/G)TGCTG upstream-variant-2KB
rs112272792 -- 62,601,577(+) ATTTA(A/C)CTGCA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for LINC01465 Gene

Variant ID Type Subtype PubMed ID
nsv740 CNV insertion 18451855
nsv821671 CNV loss 15273396

Variation tolerance for LINC01465 Gene

Gene Damage Index Score: 1.00; 20.49% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01465 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01465

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01465 Gene

Disorders for LINC01465 Gene

Relevant External Links for LINC01465

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01465

No disorders were found for LINC01465 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01465 Gene

Publications for LINC01465 Gene

  1. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer S.E. … Gibbs R.A. (Nature 2006) 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC01465 Gene

Sources for LINC01465 Gene

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