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Aliases for LINC01465 Gene

Subcategory (RNA class) for LINC01465 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01465 Gene

  • Long Intergenic Non-Protein Coding RNA 1465 2 3 5
  • C12orf61 3 4
  • Chromosome 12 Open Reading Frame 61 2

External Ids for LINC01465 Gene

Previous HGNC Symbols for LINC01465 Gene

  • C12orf61

Summaries for LINC01465 Gene

GeneCards Summary for LINC01465 Gene

LINC01465 (Long Intergenic Non-Protein Coding RNA 1465) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01465 Gene

Genomics for LINC01465 Gene

Regulatory Elements for LINC01465 Gene

Enhancers for LINC01465 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G062701 1.6 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -99.6 -99590 3.2 ESRRA TFAP4 TEAD4 MAX ZNF384 CEBPG ZIC2 ZNF644 RARA FOSL1 LINC01465 USP15 RPL32P26 GAPDHP44
GH12G062784 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -182.8 -182758 4.2 TBP TAF1 JUN SIN3A RAD21 ZBTB7B RFX5 GATA2 POLR2A FOS MIRLET7I LINC01465 GC12M062761 LOC105369795
GH12G062631 1.5 FANTOM5 Ensembl ENCODE 11.2 -28.5 -28546 2.2 FOXA2 ARID4B DMAP1 ZSCAN9 RAD21 YY1 GLIS2 EGR1 SCRT2 PCBP1 LINC01465 MIRLET7I USP15 GC12P062638 ENSG00000275180
GH12G062792 1.3 Ensembl ENCODE dbSUPER 10.9 -190.4 -190372 2.1 TBP PKNOX1 SIN3A RAD21 RFX5 GATA2 ZNF143 ZNF654 USF2 CEBPB MIRLET7I LINC01465 GC12M062761 LOC105369795
GH12G062263 1.4 FANTOM5 ENCODE dbSUPER 9.2 +339.1 339088 2.8 PKNOX1 ZMYM3 CHD7 POLR2A EGR1 CBX5 STAT2 IKZF2 STAT1 ZNF362 USP15 LINC01465 FAM19A2 MIR6125
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01465 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01465 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000052984 -110 3601 CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 SP3 MEF2D SSRP1

Genomic Location for LINC01465 Gene

Chromosome:
12
Start:
62,601,751 bp from pter
End:
62,603,690 bp from pter
Size:
1,940 bases
Orientation:
Minus strand

Genomic View for LINC01465 Gene

Genes around LINC01465 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01465 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01465 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01465 Gene

Proteins for LINC01465 Gene

  • Protein details for LINC01465 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7H1-CL061_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01465
    Protein Accession:
    Q8N7H1
    Secondary Accessions:
    • B2RMN9
    • Q3ZCV4

    Protein attributes for LINC01465 Gene

    Size:
    131 amino acids
    Molecular mass:
    13435 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01465 Gene

Post-translational modifications for LINC01465 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01465 Gene

Domains & Families for LINC01465 Gene

Protein Domains for LINC01465 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01465: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01465 Gene

Function for LINC01465 Gene

genes like me logo Genes that share phenotypes with LINC01465: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01465 Gene

Localization for LINC01465 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01465 gene
Compartment Confidence
extracellular 2
mitochondrion 1
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LINC01465 Gene

Pathways & Interactions for LINC01465 Gene

SuperPathways for LINC01465 Gene

No Data Available

Interacting Proteins for LINC01465 Gene

Gene Ontology (GO) - Biological Process for LINC01465 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01465 Gene

Drugs & Compounds for LINC01465 Gene

No Compound Related Data Available

Transcripts for LINC01465 Gene

mRNA/cDNA for LINC01465 Gene

(1) REFSEQ mRNAs :
(7) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01465 Gene

No ASD Table

Relevant External Links for LINC01465 Gene

GeneLoc Exon Structure for
LINC01465
ECgene alternative splicing isoforms for
LINC01465

Expression for LINC01465 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01465 Gene

Protein differential expression in normal tissues from HIPED for LINC01465 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC01465 Gene



Protein tissue co-expression partners for LINC01465 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of LINC01465 Gene:

LINC01465
genes like me logo Genes that share expression patterns with LINC01465: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01465 Gene

Orthologs for LINC01465 Gene

Evolution for LINC01465 Gene

ENSEMBL:
Gene Tree for LINC01465 (if available)
TreeFam:
Gene Tree for LINC01465 (if available)

No data available for Orthologs for LINC01465 Gene

Paralogs for LINC01465 Gene

No data available for Paralogs for LINC01465 Gene

Variants for LINC01465 Gene

Sequence variations from dbSNP and Humsavar for LINC01465 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000233294 -- 62,604,353(+) CTATT(C/T)CGATT upstream-variant-2KB
rs1001210968 -- 62,604,071(+) TCAGC(A/C)GTTAA downstream-variant-500B, upstream-variant-2KB
rs1003850236 -- 62,602,818(+) AGCCT(C/T)CTTAA nc-transcript-variant, upstream-variant-2KB
rs1004323303 -- 62,602,699(+) TGGTA(A/G)CACGC nc-transcript-variant, upstream-variant-2KB
rs1004925218 -- 62,603,452(+) ACAGA(A/G)CGCCG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LINC01465 Gene

Variant ID Type Subtype PubMed ID
nsv740 CNV insertion 18451855
nsv821671 CNV loss 15273396

Variation tolerance for LINC01465 Gene

Gene Damage Index Score: 1.00; 20.49% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01465 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01465

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01465 Gene

Disorders for LINC01465 Gene

Relevant External Links for LINC01465

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01465

No disorders were found for LINC01465 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01465 Gene

Publications for LINC01465 Gene

  1. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer S.E. … Gibbs R.A. (Nature 2006) 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC01465 Gene

Sources for LINC01465 Gene

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