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Aliases for LINC01465 Gene

Subcategory (RNA class) for LINC01465 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01465 Gene

  • Long Intergenic Non-Protein Coding RNA 1465 2 3 5
  • C12orf61 3 4
  • Putative Uncharacterized Protein C12orf61 3
  • Chromosome 12 Open Reading Frame 61 2

External Ids for LINC01465 Gene

Previous HGNC Symbols for LINC01465 Gene

  • C12orf61

Summaries for LINC01465 Gene

GeneCards Summary for LINC01465 Gene

LINC01465 (Long Intergenic Non-Protein Coding RNA 1465) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01465 Gene

Genomics for LINC01465 Gene

Regulatory Elements for LINC01465 Gene

Promoters for LINC01465 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around LINC01465 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01465 Gene

Chromosome:
12
Start:
62,601,751 bp from pter
End:
62,603,690 bp from pter
Size:
1,940 bases
Orientation:
Minus strand

Genomic View for LINC01465 Gene

Genes around LINC01465 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01465 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01465 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01465 Gene

Proteins for LINC01465 Gene

  • Protein details for LINC01465 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7H1-CL061_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01465
    Protein Accession:
    Q8N7H1
    Secondary Accessions:
    • B2RMN9
    • Q3ZCV4

    Protein attributes for LINC01465 Gene

    Size:
    131 amino acids
    Molecular mass:
    13435 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01465 Gene

Proteomics data for LINC01465 Gene at MOPED

Post-translational modifications for LINC01465 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01465 Gene

Domains & Families for LINC01465 Gene

Protein Domains for LINC01465 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01465: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01465 Gene

Function for LINC01465 Gene

genes like me logo Genes that share phenotypes with LINC01465: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01465 Gene

Localization for LINC01465 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01465 Gene

Pathways & Interactions for LINC01465 Gene

SuperPathways for LINC01465 Gene

No Data Available

Interacting Proteins for LINC01465 Gene

Gene Ontology (GO) - Biological Process for LINC01465 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01465 Gene

Drugs & Compounds for LINC01465 Gene

No Compound Related Data Available

Transcripts for LINC01465 Gene

mRNA/cDNA for LINC01465 Gene

(1) REFSEQ mRNAs :
(7) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01465 Gene

No ASD Table

Relevant External Links for LINC01465 Gene

GeneLoc Exon Structure for
LINC01465
ECgene alternative splicing isoforms for
LINC01465

Expression for LINC01465 Gene

mRNA expression in normal human tissues for LINC01465 Gene

Protein differential expression in normal tissues from HIPED for LINC01465 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC01465 Gene



genes like me logo Genes that share expression patterns with LINC01465: view

Protein tissue co-expression partners for LINC01465 Gene

- Elite partner

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for LINC01465 Gene

Orthologs for LINC01465 Gene

Evolution for LINC01465 Gene

ENSEMBL:
Gene Tree for LINC01465 (if available)
TreeFam:
Gene Tree for LINC01465 (if available)

No data available for Orthologs for LINC01465 Gene

Paralogs for LINC01465 Gene

No data available for Paralogs for LINC01465 Gene

Variants for LINC01465 Gene

Sequence variations from dbSNP and Humsavar for LINC01465 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1157629 -- 62,601,502(-) AATCA(A/C)ACCAT downstream-variant-500B
rs4763179 -- 62,601,489(+) GATAG(A/G)TGAGT downstream-variant-500B
rs4763180 -- 62,601,560(+) GCTTT(A/G)TCAGG downstream-variant-500B
rs7306378 -- 62,604,747(+) TTTTT(A/T)TTTTA upstream-variant-2KB
rs10877888 -- 62,605,374(+) AAATT(C/G)TGCTG upstream-variant-2KB

Variation tolerance for LINC01465 Gene

Gene Damage Index Score: 1.00; 20.49% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01465 Gene

HapMap Linkage Disequilibrium report
LINC01465

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01465 Gene

Disorders for LINC01465 Gene

Relevant External Links for LINC01465

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01465

No disorders were found for LINC01465 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01465 Gene

Publications for LINC01465 Gene

  1. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer S.E. … Gibbs R.A. (Nature 2006) 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for LINC01465 Gene

Sources for LINC01465 Gene

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