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Aliases for LINC01465 Gene

Subcategory (RNA class) for LINC01465 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01465 Gene

  • Long Intergenic Non-Protein Coding RNA 1465 2 3
  • C12orf61 3 4
  • Putative Uncharacterized Protein C12orf61 3
  • Chromosome 12 Open Reading Frame 61 2

External Ids for LINC01465 Gene

Previous HGNC Symbols for LINC01465 Gene

  • C12orf61

Summaries for LINC01465 Gene

GeneCards Summary for LINC01465 Gene

LINC01465 (Long Intergenic Non-Protein Coding RNA 1465) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01465 Gene

Genomics for LINC01465 Gene

Genomic Location for LINC01465 Gene

Start:
62,601,751 bp from pter
End:
62,603,690 bp from pter
Size:
1,940 bases
Orientation:
Minus strand

Genomic View for LINC01465 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC01465 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01465 Gene

No data available for Regulatory Elements for LINC01465 Gene

Proteins for LINC01465 Gene

  • Protein details for LINC01465 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7H1-CL061_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01465
    Protein Accession:
    Q8N7H1
    Secondary Accessions:
    • B2RMN9
    • Q3ZCV4

    Protein attributes for LINC01465 Gene

    Size:
    131 amino acids
    Molecular mass:
    13435 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01465 Gene

Proteomics data for LINC01465 Gene at MOPED

Post-translational modifications for LINC01465 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01465 Gene

Domains for LINC01465 Gene

Protein Domains for LINC01465 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01465: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01465 Gene

Function for LINC01465 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC01465 Gene

Localization for LINC01465 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01465 Gene

Pathways for LINC01465 Gene

SuperPathways for LINC01465 Gene

No Data Available

Interacting Proteins for LINC01465 Gene

Gene Ontology (GO) - Biological Process for LINC01465 Gene

None

No data available for Pathways by source for LINC01465 Gene

Transcripts for LINC01465 Gene

mRNA/cDNA for LINC01465 Gene

(7) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01465 Gene

No ASD Table

Relevant External Links for LINC01465 Gene

GeneLoc Exon Structure for
LINC01465
ECgene alternative splicing isoforms for
LINC01465

Expression for LINC01465 Gene

mRNA expression in normal human tissues for LINC01465 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for LINC01465 Gene

genes like me logo Genes that share expressions with LINC01465: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for LINC01465 Gene

Orthologs for LINC01465 Gene

Evolution for LINC01465 Gene

ENSEMBL:
Gene Tree for LINC01465 (if available)
TreeFam:
Gene Tree for LINC01465 (if available)

No data available for Orthologs for LINC01465 Gene

Paralogs for LINC01465 Gene

No data available for Paralogs for LINC01465 Gene

Variants for LINC01465 Gene

Sequence variations from dbSNP and Humsavar for LINC01465 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs1157629 -- 62,601,502(-) AATCA(A/C)ACCAT downstream-variant-500B, intron-variant
rs4763179 -- 62,601,489(+) GATAG(A/G)TGAGT downstream-variant-500B, intron-variant
rs4763180 -- 62,601,560(+) GCTTT(A/G)TCAGG downstream-variant-500B, intron-variant
rs7306378 -- 62,604,747(+) TTTTT(A/T)TTTTA upstream-variant-2KB
rs10877888 -- 62,605,374(+) AAATT(C/G)TGCTG upstream-variant-2KB

Relevant External Links for LINC01465 Gene

HapMap Linkage Disequilibrium report
LINC01465

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01465 Gene

Disorders for LINC01465 Gene

No disorders were found for LINC01465 Gene.

No data available for UniProtKB/Swiss-Prot for LINC01465 Gene

Publications for LINC01465 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer S.E. … Gibbs R.A. (Nature 2006) 4

Products for LINC01465 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01465
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC01465
    • Block miRNA regulation of LINC01465 using miScript Target Protectors

    Sources for LINC01465 Gene

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