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Aliases for LINC01451 Gene

Subcategory (RNA class) for LINC01451 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01451 Gene

  • Long Intergenic Non-Protein Coding RNA 1451 2 3 5
  • Hepatocellular Carcinoma Associated Transcript 4 (Non-Protein Coding) 2 3
  • HCCAT4 3

External Ids for LINC01451 Gene

Previous HGNC Symbols for LINC01451 Gene

  • HCCAT4

Summaries for LINC01451 Gene

GeneCards Summary for LINC01451 Gene

LINC01451 (Long Intergenic Non-Protein Coding RNA 1451) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01451 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01451 Gene

Genomics for LINC01451 Gene

GeneHancer (GH) Regulatory Elements for LINC01451 Gene

Promoters and enhancers for LINC01451 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I136613 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.8 -3.7 -3681 14.5 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B DMAP1 YY1 FOS DEK DPH7 INPP5E ARRDC1-AS1 EXD3 SNAPC4 ANAPC2 QSOX2 NOTCH1 MAN1B1 CCDC183-AS1
GH09I136586 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +29.0 29038 3.5 ATF1 SIN3A ETS1 TCF12 ZNF766 GLIS2 ARID2 ZNF143 ATF7 REST NALT1 ENSG00000227512 C9orf163 LINC01451 MIR4674
GH09I136578 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.3 +38.1 38108 1.4 HDGF PKNOX1 ARNT YBX1 GLI4 ZBTB7B GLIS2 ZNF302 ZNF207 ZNF263 ANAPC2 INPP5E DPH7 EXD3 QSOX2 MAN1B1 SDCCAG3 ABCA2 SEC16A SNHG7
GH09I136563 Enhancer 2.1 VISTA FANTOM5 Ensembl ENCODE dbSUPER 0.2 +48.6 48639 10.7 HDGF CLOCK FOXA2 MLX ARID4B NEUROD1 SIN3A YBX1 ZBTB7B IRF4 EXD3 INPP5E ANAPC2 QSOX2 SNHG7 SNAPC4 SDCCAG3 MAN1B1 SEC16A NOTCH1
GH09I136602 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +13.0 12951 2.8 KLF1 SP2 ZMYM3 ZIC2 NR2F2 ZFHX2 ZFP36 KDM1A LINC01451 MIR4674
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01451 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01451 Gene

Genomic Locations for LINC01451 Gene
chr9:136,612,024-136,617,181
(GRCh38/hg38)
Size:
5,158 bases
Orientation:
Minus strand
chr9:139,510,761-139,511,298
(GRCh37/hg19)

Genomic View for LINC01451 Gene

Genes around LINC01451 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01451 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01451 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01451 Gene

Proteins for LINC01451 Gene

Post-translational modifications for LINC01451 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01451 Gene

Domains & Families for LINC01451 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01451 Gene

Function for LINC01451 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01451 Gene

Localization for LINC01451 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01451 Gene

Pathways & Interactions for LINC01451 Gene

SuperPathways for LINC01451 Gene

No Data Available

Interacting Proteins for LINC01451 Gene

Gene Ontology (GO) - Biological Process for LINC01451 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01451 Gene

Drugs & Compounds for LINC01451 Gene

No Compound Related Data Available

Transcripts for LINC01451 Gene

mRNA/cDNA for LINC01451 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01451 Gene

No ASD Table

Relevant External Links for LINC01451 Gene

GeneLoc Exon Structure for
LINC01451
ECgene alternative splicing isoforms for
LINC01451

Expression for LINC01451 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01451 Gene:

LINC01451
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01451 Gene

Orthologs for LINC01451 Gene

Evolution for LINC01451 Gene

ENSEMBL:
Gene Tree for LINC01451 (if available)
TreeFam:
Gene Tree for LINC01451 (if available)

No data available for Orthologs for LINC01451 Gene

Paralogs for LINC01451 Gene

No data available for Paralogs for LINC01451 Gene

Variants for LINC01451 Gene

Sequence variations from dbSNP and Humsavar for LINC01451 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000539259 -- 136,618,262(-) C/T upstream_transcript_variant
rs1000589805 -- 136,618,057(-) G/A upstream_transcript_variant
rs1000767023 -- 136,614,022(-) G/A intron_variant
rs1001094709 -- 136,613,794(-) G/A intron_variant
rs1001753006 -- 136,618,538(-) T/C upstream_transcript_variant

Additional Variant Information for LINC01451 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01451

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01451 Gene

Disorders for LINC01451 Gene

Additional Disease Information for LINC01451

No disorders were found for LINC01451 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01451 Gene

Publications for LINC01451 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LINC01451 Gene

Sources for LINC01451 Gene

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