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Aliases for LINC01451 Gene

Subcategory (RNA class) for LINC01451 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01451 Gene

  • Long Intergenic Non-Protein Coding RNA 1451 2 3 5
  • Hepatocellular Carcinoma Associated Transcript 4 (Non-Protein Coding) 2 3
  • HCCAT4 3

External Ids for LINC01451 Gene

Previous HGNC Symbols for LINC01451 Gene

  • HCCAT4

Summaries for LINC01451 Gene

GeneCards Summary for LINC01451 Gene

LINC01451 (Long Intergenic Non-Protein Coding RNA 1451) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01451 Gene

Genomics for LINC01451 Gene

Regulatory Elements for LINC01451 Gene

Enhancers for LINC01451 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F136613 1.4 FANTOM5 Ensembl ENCODE 0.8 -3.7 -3681 14.5 HDGF PKNOX1 MLX ZFP64 SIN3A ARID4B DMAP1 YY1 FOS DEK DPH7 ARRDC1-AS1 SNAPC4 ANAPC2 NOTCH1 CCDC183-AS1 FUT7 EGFL7 SEC16A ABCA2
GH09F136602 0.7 Ensembl ENCODE 0.4 +12.0 11964 6.0 CTCF KLF1 L3MBTL2 SP2 KLF17 ZMYM3 REST ZIC2 ZBTB7A NR2F2 MAMDC4 LCN8 LINC01451 MIR4674
GH09F136628 1.1 Ensembl ENCODE 0.4 -13.3 -13282 3.4 HDGF PKNOX1 WRNIP1 ARID4B GLI4 ZNF2 ZNF121 GLIS2 ZNF143 ZNF207 LOC105376325 LINC01451
GH09F136629 0.4 ENCODE 0.4 -11.2 -11163 0.2 SMARCA4 POLR2A LINC01451 LOC105376325
GH09F136599 0.6 Ensembl ENCODE 0.3 +17.2 17170 1.5 ZNF263 GLIS2 ZNF341 GLIS1 ZNF600 ZIC2 LINC01451 MIR4674
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LINC01451 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01451 Gene

Chromosome:
9
Start:
136,612,024 bp from pter
End:
136,617,181 bp from pter
Size:
5,158 bases
Orientation:
Minus strand

Genomic View for LINC01451 Gene

Genes around LINC01451 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01451 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01451 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01451 Gene

Proteins for LINC01451 Gene

Post-translational modifications for LINC01451 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01451 Gene

Domains & Families for LINC01451 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01451 Gene

Function for LINC01451 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01451 Gene

Localization for LINC01451 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01451 Gene

Pathways & Interactions for LINC01451 Gene

SuperPathways for LINC01451 Gene

No Data Available

Interacting Proteins for LINC01451 Gene

Gene Ontology (GO) - Biological Process for LINC01451 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01451 Gene

Transcripts for LINC01451 Gene

mRNA/cDNA for LINC01451 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01451 Gene

No ASD Table

Relevant External Links for LINC01451 Gene

GeneLoc Exon Structure for
LINC01451
ECgene alternative splicing isoforms for
LINC01451

Expression for LINC01451 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01451 Gene:

LINC01451
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01451 Gene

Orthologs for LINC01451 Gene

Evolution for LINC01451 Gene

ENSEMBL:
Gene Tree for LINC01451 (if available)
TreeFam:
Gene Tree for LINC01451 (if available)

No data available for Orthologs for LINC01451 Gene

Paralogs for LINC01451 Gene

No data available for Paralogs for LINC01451 Gene

Variants for LINC01451 Gene

Sequence variations from dbSNP and Humsavar for LINC01451 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10870098 -- 136,618,085(+) AGCCT(A/G)GGAGA upstream-variant-2KB
rs111238961 -- 136,615,763(+) ACTAG(A/G)GATGG nc-transcript-variant
rs11145794 -- 136,611,723(+) ACATT(C/G)CCACC downstream-variant-500B
rs11145795 -- 136,611,789(+) GCGCC(A/G)AGATC downstream-variant-500B
rs11145796 -- 136,614,892(+) TCCCA(A/G)GGGCT nc-transcript-variant

Relevant External Links for LINC01451 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01451

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01451 Gene

Disorders for LINC01451 Gene

Relevant External Links for LINC01451

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01451

No disorders were found for LINC01451 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01451 Gene

Publications for LINC01451 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for LINC01451 Gene

Sources for LINC01451 Gene

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