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Aliases for LINC01399 Gene

Subcategory (RNA class) for LINC01399 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01399 Gene

  • Long Intergenic Non-Protein Coding RNA 1399 2 3 5
  • CTA-714B7.5 3

External Ids for LINC01399 Gene

Summaries for LINC01399 Gene

GeneCards Summary for LINC01399 Gene

LINC01399 (Long Intergenic Non-Protein Coding RNA 1399) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01399 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01399 Gene

Genomics for LINC01399 Gene

Regulatory Elements for LINC01399 Gene

Enhancers for LINC01399 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H035133 1.3 FANTOM5 ENCODE dbSUPER 4.4 +96.2 96159 2 TBL1XR1 TAL1 NRF1 ZSCAN4 EBF1 ZNF398 ZIC2 TCF12 NCOR1 ZNF341 LINC01399 ISX GC22P035126 ENSG00000238153
GH22H035231 0.9 ENCODE 0.7 0.0 -47 0 HDAC1 ELF3 TBP PKNOX1 ATF1 ARID4B EGR1 ZSCAN5C ZHX1 THAP11 MCM5 HMGXB4 LINC01399
GH22H035233 0.8 ENCODE 0.7 -0.3 -307 0 CTCF PKNOX1 KLF1 ATF1 FOXA2 MTA3 CTBP1 POLR2A ZHX1 CHD2 LINC01399 HMGXB4
GH22H035232 0.7 ENCODE 0.7 -0.6 -617 0 CTCF ZNF2 RAD21 RFX5 ZFHX2 EGR1 SMC3 ZNF143 RUNX3 EGR2 LINC01399 HMGXB4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01399 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01399 Gene

Chromosome:
22
Start:
35,119,824 bp from pter
End:
35,231,056 bp from pter
Size:
111,233 bases
Orientation:
Minus strand

Genomic View for LINC01399 Gene

Genes around LINC01399 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01399 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01399 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01399 Gene

Proteins for LINC01399 Gene

Post-translational modifications for LINC01399 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01399 Gene

Domains & Families for LINC01399 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01399 Gene

Function for LINC01399 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01399 Gene

Localization for LINC01399 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01399 Gene

Pathways & Interactions for LINC01399 Gene

SuperPathways for LINC01399 Gene

No Data Available

Interacting Proteins for LINC01399 Gene

Gene Ontology (GO) - Biological Process for LINC01399 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01399 Gene

Drugs & Compounds for LINC01399 Gene

No Compound Related Data Available

Transcripts for LINC01399 Gene

mRNA/cDNA for LINC01399 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01399 Gene

No ASD Table

Relevant External Links for LINC01399 Gene

GeneLoc Exon Structure for
LINC01399
ECgene alternative splicing isoforms for
LINC01399

Expression for LINC01399 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01399 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01399 Gene:

LINC01399
genes like me logo Genes that share expression patterns with LINC01399: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01399 Gene

Orthologs for LINC01399 Gene

Evolution for LINC01399 Gene

ENSEMBL:
Gene Tree for LINC01399 (if available)
TreeFam:
Gene Tree for LINC01399 (if available)

No data available for Orthologs for LINC01399 Gene

Paralogs for LINC01399 Gene

No data available for Paralogs for LINC01399 Gene

Variants for LINC01399 Gene

Sequence variations from dbSNP and Humsavar for LINC01399 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000068769 -- 35,200,543(+) GAAGA(A/G)TATAA intron-variant
rs1000071265 -- 35,159,895(+) CACTT(G/T)GGGAG intron-variant
rs1000088996 -- 35,159,644(+) TACGG(C/T)TCACT intron-variant
rs1000124750 -- 35,160,084(+) TGAGC(C/T)GAGAT intron-variant
rs1000135595 -- 35,202,065(+) TCCCA(C/T)ACTTC intron-variant

Relevant External Links for LINC01399 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01399

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01399 Gene

Disorders for LINC01399 Gene

Relevant External Links for LINC01399

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01399

No disorders were found for LINC01399 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01399 Gene

Publications for LINC01399 Gene

  1. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3 60

Products for LINC01399 Gene

Sources for LINC01399 Gene

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