Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01396 Gene

Subcategory (RNA class) for LINC01396 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01396 Gene

  • Long Intergenic Non-Protein Coding RNA 1396 2 3 5

External Ids for LINC01396 Gene

Summaries for LINC01396 Gene

GeneCards Summary for LINC01396 Gene

LINC01396 (Long Intergenic Non-Protein Coding RNA 1396) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01396 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01396 Gene

Genomics for LINC01396 Gene

Regulatory Elements for LINC01396 Gene

Enhancers for LINC01396 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H004540 1.5 FANTOM5 ENCODE 18.3 -302.6 -302596 2.6 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A STX18-AS1 LINC01396 STX18-IT1 TMEM128 LDHAP1 RN7SKP113 FAM86EP NSG1 STX18 ZBTB49
GH04H004852 0.9 Ensembl ENCODE 0.4 +8.7 8670 1.2 RING1 CTCF L3MBTL2 SUZ12 ETV1 NRF1 ZBTB11 ZBTB40 GABPA HDAC2 STX18-AS1 ZBTB49 STX18 LINC01396 MSX1
GH04H004853 0.5 FANTOM5 0.4 +9.5 9516 0.2 SUZ12 EZH2 LINC01396 MSX1
GH04H004856 0.5 ENCODE 0.4 +12.1 12112 0.2 SUZ12 ZFX TCF7L2 EZH2 MSX1 LINC01396
GH04H004857 0.5 ENCODE 0.4 +11.9 11912 0.2 SUZ12 ZFX EZH2 MSX1 LINC01396
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01396 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01396 Gene

Genomic Locations for LINC01396 Gene
6,391 bases
Plus strand

Genomic View for LINC01396 Gene

Genes around LINC01396 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01396 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01396 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01396 Gene

Proteins for LINC01396 Gene

Post-translational modifications for LINC01396 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01396 Gene

Domains & Families for LINC01396 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01396 Gene

Function for LINC01396 Gene

Phenotypes From GWAS Catalog for LINC01396 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01396 Gene

Localization for LINC01396 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01396 Gene

Pathways & Interactions for LINC01396 Gene

SuperPathways for LINC01396 Gene

No Data Available

Interacting Proteins for LINC01396 Gene

Gene Ontology (GO) - Biological Process for LINC01396 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01396 Gene

Drugs & Compounds for LINC01396 Gene

No Compound Related Data Available

Transcripts for LINC01396 Gene

mRNA/cDNA for LINC01396 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01396 Gene

No ASD Table

Relevant External Links for LINC01396 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01396 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01396 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01396 Gene

Orthologs for LINC01396 Gene

Evolution for LINC01396 Gene

Gene Tree for LINC01396 (if available)
Gene Tree for LINC01396 (if available)

No data available for Orthologs for LINC01396 Gene

Paralogs for LINC01396 Gene

No data available for Paralogs for LINC01396 Gene

Variants for LINC01396 Gene

Sequence variations from dbSNP and Humsavar for LINC01396 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs10002530 -- 4,847,876(+) ACAAT(A/T)TAAGA intron-variant
rs10004884 -- 4,850,300(+) CCAAC(C/T)CTAAC intron-variant
rs1000615831 -- 4,847,312(+) CCCGA(A/C)CCTTC intron-variant
rs1000802569 -- 4,846,325(+) AAATG(A/T)TTGTT intron-variant
rs1001845837 -- 4,850,995(+) ACCCC(C/T)ACCCC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for LINC01396 Gene

Variant ID Type Subtype PubMed ID
nsv997889 CNV gain 25217958
nsv1109576 CNV deletion 24896259
esv3569249 CNV loss 25503493
esv34196 OTHER inversion 12058347
dgv1451e212 CNV loss 25503493

Relevant External Links for LINC01396 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01396 Gene

Disorders for LINC01396 Gene

Relevant External Links for LINC01396

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for LINC01396 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01396 Gene

Publications for LINC01396 Gene

No publications were found for LINC01396 Gene.

Products for LINC01396 Gene

Sources for LINC01396 Gene

Loading form....