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Aliases for LINC01389 Gene

Subcategory (RNA class) for LINC01389 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01389 Gene

  • Long Intergenic Non-Protein Coding RNA 1389 2 3 5

External Ids for LINC01389 Gene

Summaries for LINC01389 Gene

GeneCards Summary for LINC01389 Gene

LINC01389 (Long Intergenic Non-Protein Coding RNA 1389) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01389 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01389 Gene

Genomics for LINC01389 Gene

Regulatory Elements for LINC01389 Gene

Enhancers for LINC01389 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H047224 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11 +208.4 208426 8.8 HDGF PKNOX1 ARNT YY1 ZNF766 CBX5 ZC3H11A REST SMARCB1 ZNF592 TAL1 LRRC41 PDZK1IP1 LINC01389 NSUN4 EFCAB14-AS1 FOXE3 ENSG00000226252
GH01H047332 1.7 FANTOM5 ENCODE dbSUPER 10.1 +103.0 103029 4.2 HDGF FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF143 DEK ENSG00000226252 FOXE3 CMPK1 TAL1 LINC01389 PDZK1IP1 FOXD2 GC01P047350
GH01H047188 1.5 Ensembl ENCODE dbSUPER 11.4 +246.1 246083 4.5 HDGF PKNOX1 ATF1 MLX ARID4B DMAP1 ZNF2 TCF12 ZNF143 ATF7 PDZK1IP1 ENSG00000226252 TAL1 FOXE3 LINC01389 FOXD2 FOXD2-AS1 GC01M047220
GH01H046717 1.4 ENCODE dbSUPER 11 +718.5 718533 3.3 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 LRRC41 EFCAB14-AS1 EFCAB14 NSUN4 TEX38 LINC01389 CYP4B1 MOB3C NENFP1 ATPAF1
GH01H047312 1.4 ENCODE dbSUPER 10.8 +123.3 123278 3.1 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 EFCAB14-AS1 NSUN4 CMPK1 ENSG00000272491 LINC01389 MOB3C FOXE3 STIL GC01M047303
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01389 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01389 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000006055 -283 2001 HDGF ARNT ARID4B SIN3A ZNF2 CBX5 ZNF143 DEK SP3 ZC3H11A

Genomic Locations for LINC01389 Gene

Genomic Locations for LINC01389 Gene
chr1:47,380,796-47,437,317
(GRCh38/hg38)
Size:
56,522 bases
Orientation:
Minus strand
chr1:47,846,600-47,874,149
(GRCh37/hg19)

Genomic View for LINC01389 Gene

Genes around LINC01389 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01389 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01389 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01389 Gene

Proteins for LINC01389 Gene

Post-translational modifications for LINC01389 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01389 Gene

Domains & Families for LINC01389 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01389 Gene

Function for LINC01389 Gene

Phenotypes From GWAS Catalog for LINC01389 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01389 Gene

Localization for LINC01389 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01389 Gene

Pathways & Interactions for LINC01389 Gene

SuperPathways for LINC01389 Gene

No Data Available

Interacting Proteins for LINC01389 Gene

Gene Ontology (GO) - Biological Process for LINC01389 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01389 Gene

Drugs & Compounds for LINC01389 Gene

No Compound Related Data Available

Transcripts for LINC01389 Gene

mRNA/cDNA for LINC01389 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01389 Gene

No ASD Table

Relevant External Links for LINC01389 Gene

GeneLoc Exon Structure for
LINC01389
ECgene alternative splicing isoforms for
LINC01389

Expression for LINC01389 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01389 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01389 Gene:

LINC01389
genes like me logo Genes that share expression patterns with LINC01389: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01389 Gene

Orthologs for LINC01389 Gene

Evolution for LINC01389 Gene

ENSEMBL:
Gene Tree for LINC01389 (if available)
TreeFam:
Gene Tree for LINC01389 (if available)

No data available for Orthologs for LINC01389 Gene

Paralogs for LINC01389 Gene

No data available for Paralogs for LINC01389 Gene

Variants for LINC01389 Gene

Sequence variations from dbSNP and Humsavar for LINC01389 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1057518737 Pathogenic 47,416,666(+) CAGAA(C/G)AGCAT intron-variant, reference, missense
rs1057518738 Pathogenic 47,416,622(+) TCACC(A/G)AACGC intron-variant, reference, missense
rs387906793 Pathogenic 47,417,274(+) CCTGT(G/T)AGCCT intron-variant, reference, stop-lost
rs80358194 Pathogenic 47,417,035(+) TGCTG(A/C)GCCGC intron-variant, reference, stop-gained
rs552420470 Likely benign 47,417,213(+) CGCTC(A/G)GCCCT intron-variant, reference, missense

Relevant External Links for LINC01389 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01389

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01389 Gene

Disorders for LINC01389 Gene

Relevant External Links for LINC01389

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01389

No disorders were found for LINC01389 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01389 Gene

Publications for LINC01389 Gene

No publications were found for LINC01389 Gene.

Products for LINC01389 Gene

Sources for LINC01389 Gene

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