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Aliases for LINC01342 Gene

Subcategory (RNA class) for LINC01342 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01342 Gene

  • Long Intergenic Non-Protein Coding RNA 1342 2 3 5

External Ids for LINC01342 Gene

Summaries for LINC01342 Gene

GeneCards Summary for LINC01342 Gene

LINC01342 (Long Intergenic Non-Protein Coding RNA 1342) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01342 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01342 Gene

Genomics for LINC01342 Gene

Regulatory Elements for LINC01342 Gene

Enhancers for LINC01342 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H001131 1.4 Ensembl ENCODE dbSUPER 5.2 -1.9 -1937 6.5 ELF3 PKNOX1 NFRKB BMI1 RAD21 EGR1 SCRT2 ATF7 RUNX3 CREM TTLL10 TTLL10-AS1 SDF4 B3GALT6 C1QTNF12 UBE2J2 C1orf159 LINC01342 GC01M001125
GH01H001127 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -7.8 -7776 4 FOXA2 ARID4B DMAP1 RAD21 YY1 CREM EGR2 THAP11 KLF11 MCM3 SDF4 TTLL10 MXRA8 TTLL10-AS1 ENSG00000230092 B3GALT6 C1QTNF12 UBE2J2 LOC100288379 CDK11A
GH01H001142 1.4 Ensembl ENCODE dbSUPER 0.4 +7.3 7295 3.8 PKNOX1 KLF17 NFXL1 EGR1 EGR2 ELF1 ZNF398 NR2F2 ATF4 SMARCA4 LINC01786 ENSG00000272455 ENSG00000240731 TTLL10 LINC01128 LINC01342 GC01P001160
GH01H001156 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +21.4 21418 4.4 HDGF ATF1 SIN3A ARID4B ZNF766 ATF7 SP5 ZHX2 ZNF592 MEF2D ATAD3B INTS11 LOC105378580 LINC01786 SLC35E2 LINC00115 TTLL10 ENSG00000240731 LOC100129381 TTLL10-AS1
GH01H001149 0.8 ENCODE dbSUPER 0.4 +13.3 13292 1.8 ZFP69B KLF1 GLIS1 FOS KLF8 TTLL10 TTLL10-AS1 GC01P001160 LINC01342
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01342 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01342 Gene

Genomic Locations for LINC01342 Gene
chr1:1,137,017-1,144,056
(GRCh38/hg38)
Size:
7,040 bases
Orientation:
Plus strand
chr1:1,072,397-1,079,436
(GRCh37/hg19)

Genomic View for LINC01342 Gene

Genes around LINC01342 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01342 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01342 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01342 Gene

Proteins for LINC01342 Gene

Post-translational modifications for LINC01342 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01342 Gene

Domains & Families for LINC01342 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01342 Gene

Function for LINC01342 Gene

Phenotypes From GWAS Catalog for LINC01342 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01342 Gene

Localization for LINC01342 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01342 Gene

Pathways & Interactions for LINC01342 Gene

SuperPathways for LINC01342 Gene

No Data Available

Interacting Proteins for LINC01342 Gene

Gene Ontology (GO) - Biological Process for LINC01342 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01342 Gene

Drugs & Compounds for LINC01342 Gene

No Compound Related Data Available

Transcripts for LINC01342 Gene

mRNA/cDNA for LINC01342 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01342 Gene

No ASD Table

Relevant External Links for LINC01342 Gene

GeneLoc Exon Structure for
LINC01342
ECgene alternative splicing isoforms for
LINC01342

Expression for LINC01342 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01342 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01342 Gene:

LINC01342
genes like me logo Genes that share expression patterns with LINC01342: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01342 Gene

Orthologs for LINC01342 Gene

Evolution for LINC01342 Gene

ENSEMBL:
Gene Tree for LINC01342 (if available)
TreeFam:
Gene Tree for LINC01342 (if available)

No data available for Orthologs for LINC01342 Gene

Paralogs for LINC01342 Gene

No data available for Paralogs for LINC01342 Gene

Variants for LINC01342 Gene

Sequence variations from dbSNP and Humsavar for LINC01342 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000118254 -- 1,137,043(+) AGAGC(-/TGG)GGGAG nc-transcript-variant
rs1000379390 -- 1,143,236(+) TGCCT(A/G)CCTCA nc-transcript-variant
rs1001507515 -- 1,135,768(+) AACCT(C/G)CTATC upstream-variant-2KB
rs1001779477 -- 1,136,128(+) CTGCT(A/T)TTGCA upstream-variant-2KB
rs1001789617 -- 1,143,437(+) CCTGG(A/G)GACTC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01342 Gene

Variant ID Type Subtype PubMed ID
nsv950452 CNV deletion 24416366
nsv544954 CNV loss 21841781
nsv544953 CNV loss 21841781
nsv544947 CNV loss 21841781
nsv517709 CNV gain+loss 19592680
nsv482937 CNV loss 15286789
nsv470680 CNV loss 18288195
nsv428334 CNV gain 18775914
nsv161017 CNV deletion 16902084
nsv1160772 CNV duplication 26073780
nsv1160644 CNV deletion 26073780
nsv1126167 CNV deletion 24896259
nsv1074960 CNV deletion 25765185
nsv10161 CNV gain+loss 18304495
nsv1013524 CNV gain 25217958
nsv1003578 CNV gain 25217958
esv26506 CNV gain 19812545
esv2630187 CNV loss 19546169
dgv2n67 CNV gain 20364138
dgv22n54 CNV gain 21841781

Relevant External Links for LINC01342 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01342

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01342 Gene

Disorders for LINC01342 Gene

Relevant External Links for LINC01342

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01342

No disorders were found for LINC01342 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01342 Gene

Publications for LINC01342 Gene

  1. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G … Rudan I (PLoS genetics 2013) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LINC01342 Gene

Sources for LINC01342 Gene

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