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Aliases for LINC01311 Gene

Subcategory (RNA class) for LINC01311 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for LINC01311 Gene

  • Long Intergenic Non-Protein Coding RNA 1311 2 3 5

External Ids for LINC01311 Gene

ORGUL Members for LINC01311 Gene

Summaries for LINC01311 Gene

GeneCards Summary for LINC01311 Gene

LINC01311 (Long Intergenic Non-Protein Coding RNA 1311) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01311 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01311 Gene

Genomics for LINC01311 Gene

Regulatory Elements for LINC01311 Gene

Enhancers for LINC01311 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H019760 1.8 VISTA Ensembl ENCODE 49.9 +592.9 592929 8 HDGF PKNOX1 ATF1 FOXA2 ARNT ZNF2 TCF12 GATA2 FOS ATF7 LINC01311 DGCR8 LOC100420177 TRMT2A ZDHHC8 RANBP1 RPL8P5 KLHL22 UFD1 ABHD17AP4
GH22H019958 1.9 FANTOM5 Ensembl ENCODE dbSUPER 43.4 +790.1 790080 6 HNRNPUL1 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B DMAP1 ZNF2 YY1 LINC01311 LOC100420177 UFD1 RPL7AP70 KLHL22 ENSG00000273343 ZNF74 MED15 DGCR8 COMT
GH22H019982 1.8 FANTOM5 Ensembl ENCODE dbSUPER 42.9 +812.6 812620 3 HDGF ZNF121 GLIS2 FOS ATF7 SP3 JUNB ZC3H11A TSHZ1 ZNF491 DGCR8 LINC01311 LOC100420177 LZTR1 ARVCF KLHL22 TBX1 TRMT2A ENSG00000273343 ZNF74
GH22H019947 1.9 FANTOM5 Ensembl ENCODE dbSUPER 35.2 +779.3 779329 7 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B FEZF1 DMAP1 ZNF2 CBX5 DGCR8 TRMT2A LOC100420177 LINC01311 RPL8P5 ENSG00000273300 MED15 DGCR11 RPL7AP70 ZDHHC8
GH22H019217 1.3 Ensembl ENCODE 47.2 +47.1 47142 1 ATF1 ARNT FEZF1 ZNF2 TCF12 ZNF121 GATA2 ATF7 ZC3H11A REST DGCR8 LINC01311 SLC25A1 TRMT2A ENSG00000273300 ZDHHC8 RPL7AP70 CLTCL1 RPL8P5 DGCR11
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01311 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01311 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000143725 405 1201 HDGF MLX ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 ZNF207

Genomic Location for LINC01311 Gene

Chromosome:
22
Start:
19,171,395 bp from pter
End:
19,172,839 bp from pter
Size:
1,445 bases
Orientation:
Plus strand

Genomic View for LINC01311 Gene

Genes around LINC01311 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01311 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01311 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01311 Gene

Proteins for LINC01311 Gene

Post-translational modifications for LINC01311 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01311 Gene

Domains & Families for LINC01311 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01311 Gene

Function for LINC01311 Gene

Phenotypes From GWAS Catalog for LINC01311 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01311 Gene

Localization for LINC01311 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01311 Gene

Pathways & Interactions for LINC01311 Gene

SuperPathways for LINC01311 Gene

No Data Available

Interacting Proteins for LINC01311 Gene

Gene Ontology (GO) - Biological Process for LINC01311 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01311 Gene

Drugs & Compounds for LINC01311 Gene

No Compound Related Data Available

Transcripts for LINC01311 Gene

mRNA/cDNA for LINC01311 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01311 Gene

No ASD Table

Relevant External Links for LINC01311 Gene

GeneLoc Exon Structure for
LINC01311
ECgene alternative splicing isoforms for
LINC01311

Expression for LINC01311 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01311 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01311 Gene:

LINC01311
genes like me logo Genes that share expression patterns with LINC01311: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01311 Gene

Orthologs for LINC01311 Gene

Evolution for LINC01311 Gene

ENSEMBL:
Gene Tree for LINC01311 (if available)
TreeFam:
Gene Tree for LINC01311 (if available)

No data available for Orthologs for LINC01311 Gene

Paralogs for LINC01311 Gene

No data available for Paralogs for LINC01311 Gene

Variants for LINC01311 Gene

Sequence variations from dbSNP and Humsavar for LINC01311 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000045135 -- 19,172,630(+) TGTTC(C/T)CTGTG nc-transcript-variant
rs1000138095 -- 19,172,248(+) GCCAC(C/G)GCAGG nc-transcript-variant
rs1002770163 -- 19,171,489(+) AGGGG(C/T)TGGTG upstream-variant-2KB
rs1003908144 -- 19,169,896(+) CGAAC(G/T)CGCGG upstream-variant-2KB
rs1006940296 -- 19,171,751(+) CTCGG(C/T)GGCCC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01311 Gene

Variant ID Type Subtype PubMed ID
esv3575418 CNV gain 25503493
nsv588213 CNV gain 21841781
nsv588216 CNV gain 21841781
nsv834122 CNV loss 17160897

Relevant External Links for LINC01311 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01311

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01311 Gene

Disorders for LINC01311 Gene

Relevant External Links for LINC01311

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01311

No disorders were found for LINC01311 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01311 Gene

Publications for LINC01311 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M … Kato S (Investigative ophthalmology & visual science 2011) 3 60
  2. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. (PMID: 15790807) Cheng J … Gingeras TR (Science (New York, N.Y.) 2005) 3 60

Products for LINC01311 Gene

Sources for LINC01311 Gene

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