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Aliases for LINC01311 Gene

Subcategory (RNA class) for LINC01311 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for LINC01311 Gene

  • Long Intergenic Non-Protein Coding RNA 1311 2 3 5

External Ids for LINC01311 Gene

ORGUL Members for LINC01311 Gene

Summaries for LINC01311 Gene

GeneCards Summary for LINC01311 Gene

LINC01311 (Long Intergenic Non-Protein Coding RNA 1311) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01311 Gene

Genomics for LINC01311 Gene

Regulatory Elements for LINC01311 Gene

Enhancers for LINC01311 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G019994 1.6 Ensembl ENCODE dbSUPER 58.7 +826.8 826820 6.6 HDGF PKNOX1 CREB3L1 ARNT AGO1 SIN3A YBX1 ZNF766 FOS KLF13 LINC01311 LOC100420177 DGCR8 ARVCF ABHD17AP4 ENSG00000273343 RPL7AP70 COMT GC22M019988
GH22G019982 1.9 FANTOM5 Ensembl ENCODE dbSUPER 42.9 +812.6 812620 3.0 HDGF ARNT MLX AGO1 SIN3A ARID4B DMAP1 YY1 CBX5 ZNF143 LINC01311 DGCR8 LOC100420177 ARVCF ABHD17AP4 ENSG00000273343 COMT GC22M019988 GC22P019980
GH22G019429 1.4 ENCODE dbSUPER 37.2 +260.4 260379 4.7 MLX CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 LINC01311 DGCR8 UFD1 RPL7AP70 ENSG00000273300 DGCR11 RTL10 ENSG00000273343 DGCR14 CLTCL1
GH22G019958 2 FANTOM5 Ensembl ENCODE dbSUPER 23.5 +790.1 790080 6.4 HNRNPUL1 HDGF PKNOX1 FOXA2 ARNT MLX AGO1 SIN3A ARID4B DMAP1 LINC01311 LOC100420177 ENSG00000273343 COMT ARVCF RPL7AP70 GC22M019961 GC22M019943
GH22G019289 1.7 FANTOM5 ENCODE dbSUPER 26.3 +119.8 119782 3.8 HDGF PKNOX1 CREB3L1 ARNT AGO1 ARID4B SIN3A ZNF2 ZBTB7B ZNF766 LINC01311 CLTCL1 DGCR8 SLC25A1 DGCR14 GC22M019285
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01311 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01311 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000143725 405 1201 HDGF HNRNPUL1 MLX CREB3L1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9

Genomic Location for LINC01311 Gene

Chromosome:
22
Start:
19,171,395 bp from pter
End:
19,172,839 bp from pter
Size:
1,445 bases
Orientation:
Plus strand

Genomic View for LINC01311 Gene

Genes around LINC01311 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01311 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01311 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01311 Gene

Proteins for LINC01311 Gene

Post-translational modifications for LINC01311 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01311 Gene

Domains & Families for LINC01311 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01311 Gene

Function for LINC01311 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01311 Gene

Localization for LINC01311 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01311 Gene

Pathways & Interactions for LINC01311 Gene

SuperPathways for LINC01311 Gene

No Data Available

Interacting Proteins for LINC01311 Gene

Gene Ontology (GO) - Biological Process for LINC01311 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01311 Gene

Drugs & Compounds for LINC01311 Gene

No Compound Related Data Available

Transcripts for LINC01311 Gene

mRNA/cDNA for LINC01311 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01311 Gene

No ASD Table

Relevant External Links for LINC01311 Gene

GeneLoc Exon Structure for
LINC01311
ECgene alternative splicing isoforms for
LINC01311

Expression for LINC01311 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01311 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01311 Gene:

LINC01311
genes like me logo Genes that share expression patterns with LINC01311: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01311 Gene

Orthologs for LINC01311 Gene

Evolution for LINC01311 Gene

ENSEMBL:
Gene Tree for LINC01311 (if available)
TreeFam:
Gene Tree for LINC01311 (if available)

No data available for Orthologs for LINC01311 Gene

Paralogs for LINC01311 Gene

No data available for Paralogs for LINC01311 Gene

Variants for LINC01311 Gene

Sequence variations from dbSNP and Humsavar for LINC01311 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000045135 -- 19,172,630(+) TGTTC(C/T)CTGTG nc-transcript-variant
rs1000138095 -- 19,172,248(+) GCCAC(C/G)GCAGG nc-transcript-variant
rs1002770163 -- 19,171,489(+) AGGGG(C/T)TGGTG upstream-variant-2KB
rs1003908144 -- 19,169,896(+) CGAAC(G/T)CGCGG upstream-variant-2KB
rs1006940296 -- 19,171,751(+) CTCGG(C/T)GGCCC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01311 Gene

Variant ID Type Subtype PubMed ID
esv3575418 CNV gain 25503493
nsv588213 CNV gain 21841781
nsv588216 CNV gain 21841781
nsv834122 CNV loss 17160897

Relevant External Links for LINC01311 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01311

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01311 Gene

Disorders for LINC01311 Gene

Relevant External Links for LINC01311

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01311

No disorders were found for LINC01311 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01311 Gene

Publications for LINC01311 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M. … Kato S. (Invest. Ophthalmol. Vis. Sci. 2011) 3 64
  2. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. (PMID: 15790807) Cheng J. … Gingeras T.R. (Science 2005) 3 64

Products for LINC01311 Gene

Sources for LINC01311 Gene

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