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Aliases for LINC01299 Gene

Subcategory (RNA class) for LINC01299 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01299 Gene

  • Long Intergenic Non-Protein Coding RNA 1299 2 3 5
  • CTD-3025N20.2 3

External Ids for LINC01299 Gene

Summaries for LINC01299 Gene

GeneCards Summary for LINC01299 Gene

LINC01299 (Long Intergenic Non-Protein Coding RNA 1299) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01299 Gene

Genomics for LINC01299 Gene

Regulatory Elements for LINC01299 Gene

Enhancers for LINC01299 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G064755 1.4 FANTOM5 Ensembl ENCODE 10.5 +805.7 805686 2.3 TBP PKNOX1 BACH1 YBX1 EBF1 RELA POLR2A NFYB EED ZNF207 CYP7B1 LINC01299 LOC105375878 PIR54141 ENSG00000254330
GH08G065836 1.7 FANTOM5 ENCODE dbSUPER 6.6 -277.3 -277330 7.0 HDGF PKNOX1 MLX CREB3L1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 MTFR1 DNAJC5B C8orf44 ARMC1 LINC01299 PDE7A GC08M065824
GH08G065944 2 FANTOM5 Ensembl ENCODE dbSUPER 5.3 -388.0 -387993 12.7 PKNOX1 SIN3A FEZF1 ZNF2 ZNF302 ZNF143 FOS DEK SP3 ZHX2 PDE7A MTFR1 DNAJC5B LINC01299 ENSG00000272010 RRS1 GC08P065965 GC08M065874
GH08G065799 1.5 Ensembl ENCODE dbSUPER 6.1 -237.5 -237468 2.0 ATF1 ARID4B SIN3A FEZF1 ZNF48 YY1 GLIS2 MXD4 ZNF592 ZNF585B MTFR1 LINC01299 ENSG00000272010 GC08P065773 GC08M065824
GH08G065972 1.7 FANTOM5 Ensembl ENCODE dbSUPER 5.3 -411.3 -411311 2.6 PKNOX1 KLF17 BRCA1 ZNF366 ZSCAN5C SCRT2 RCOR1 FOS JUNB CEBPB DNAJC5B MTFR1 LINC01299 ENSG00000272010 PDE7A GC08M065983 GC08P065965
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01299 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01299 Gene

Chromosome:
8
Start:
65,527,008 bp from pter
End:
65,562,780 bp from pter
Size:
35,773 bases
Orientation:
Minus strand

Genomic View for LINC01299 Gene

Genes around LINC01299 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01299 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01299 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01299 Gene

Proteins for LINC01299 Gene

Post-translational modifications for LINC01299 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01299 Gene

Domains & Families for LINC01299 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01299 Gene

Function for LINC01299 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01299 Gene

Localization for LINC01299 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01299 Gene

Pathways & Interactions for LINC01299 Gene

SuperPathways for LINC01299 Gene

No Data Available

Interacting Proteins for LINC01299 Gene

Gene Ontology (GO) - Biological Process for LINC01299 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01299 Gene

Drugs & Compounds for LINC01299 Gene

No Compound Related Data Available

Transcripts for LINC01299 Gene

mRNA/cDNA for LINC01299 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01299 Gene

No ASD Table

Relevant External Links for LINC01299 Gene

GeneLoc Exon Structure for
LINC01299
ECgene alternative splicing isoforms for
LINC01299

Expression for LINC01299 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01299 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01299 Gene:

LINC01299
genes like me logo Genes that share expression patterns with LINC01299: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01299 Gene

Orthologs for LINC01299 Gene

Evolution for LINC01299 Gene

ENSEMBL:
Gene Tree for LINC01299 (if available)
TreeFam:
Gene Tree for LINC01299 (if available)

No data available for Orthologs for LINC01299 Gene

Paralogs for LINC01299 Gene

No data available for Paralogs for LINC01299 Gene

Variants for LINC01299 Gene

Sequence variations from dbSNP and Humsavar for LINC01299 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000055250 -- 65,551,707(+) TACAG(A/C)TTTCT intron-variant
rs1000060958 -- 65,563,907(+) TTGCA(C/T)TTCTC upstream-variant-2KB
rs1000119759 -- 65,555,059(+) ACCTC(C/T)CACAG intron-variant
rs1000370598 -- 65,536,673(+) GTGAC(A/G)TAATG intron-variant
rs1000487513 -- 65,531,851(+) AAGAG(A/T)TTATT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01299 Gene

Variant ID Type Subtype PubMed ID
esv2761434 CNV gain 21179565
nsv397599 CNV deletion 16902084

Relevant External Links for LINC01299 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01299

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01299 Gene

Disorders for LINC01299 Gene

Relevant External Links for LINC01299

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01299

No disorders were found for LINC01299 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01299 Gene

Publications for LINC01299 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for LINC01299 Gene

Sources for LINC01299 Gene

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