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Aliases for LINC01298 Gene

Subcategory (RNA class) for LINC01298 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01298 Gene

  • Long Intergenic Non-Protein Coding RNA 1298 2 3 5
  • Chromosome 8 Open Reading Frame 69 2
  • C8orf69 3

External Ids for LINC01298 Gene

Previous HGNC Symbols for LINC01298 Gene

  • C8orf69

Summaries for LINC01298 Gene

GeneCards Summary for LINC01298 Gene

LINC01298 (Long Intergenic Non-Protein Coding RNA 1298) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01298 Gene

Genomics for LINC01298 Gene

Regulatory Elements for LINC01298 Gene

Enhancers for LINC01298 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F094718 1.2 ENCODE 16.2 +496.3 496293 2.9 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC KIAA1429 RBM12B INTS8 ENSG00000253704 ENSG00000254283 LINC01298 PSMA2P2 GEM C8orf37 PLEKHF2
GH08F095218 0.7 Ensembl 0.8 -3.8 -3827 3.6 PKNOX1 MTA2 JUNB ZBTB40 TBX21 RAD21 NR2F2 JUND POLR2A IKZF1 RNU6-1209P PLEKHF2 C8orf37 LINC01298 TRS-AGA2-5
GH08F095223 1.4 Ensembl ENCODE 0.4 -8.9 -8904 4.6 HDGF PKNOX1 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF143 FOS SP3 ENSG00000254248 PLEKHF2 CCNE2 C8orf37 LINC01298 TRS-AGA2-5
GH08F095227 1.2 Ensembl ENCODE 0.4 -12.8 -12818 2.8 HDGF HDAC1 TBL1XR1 GATA2 ETV6 FOS CREM ZBTB2 NFYA USF2 PLEKHF2 C8orf37 LINC01298 TRS-AGA2-5
GH08F095248 1.1 Ensembl ENCODE 0.3 -32.4 -32418 0.4 HDAC1 NFRKB ARID4B ZNF2 RAD21 SCRT2 ZNF654 ZBTB2 ZBTB11 REST C8orf37 PLEKHF2 INTS8 ENSG00000253878 TP53INP1 TRS-AGA2-5 LINC01298
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01298 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01298 Gene

Chromosome:
8
Start:
95,207,007 bp from pter
End:
95,216,374 bp from pter
Size:
9,368 bases
Orientation:
Minus strand

Genomic View for LINC01298 Gene

Genes around LINC01298 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01298 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01298 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01298 Gene

Proteins for LINC01298 Gene

Post-translational modifications for LINC01298 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01298 Gene

Domains & Families for LINC01298 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01298 Gene

Function for LINC01298 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01298 Gene

Localization for LINC01298 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01298 Gene

Pathways & Interactions for LINC01298 Gene

SuperPathways for LINC01298 Gene

No Data Available

Interacting Proteins for LINC01298 Gene

Gene Ontology (GO) - Biological Process for LINC01298 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01298 Gene

Transcripts for LINC01298 Gene

mRNA/cDNA for LINC01298 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01298 Gene

No ASD Table

Relevant External Links for LINC01298 Gene

GeneLoc Exon Structure for
LINC01298
ECgene alternative splicing isoforms for
LINC01298

Expression for LINC01298 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01298 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01298 Gene:

LINC01298
genes like me logo Genes that share expression patterns with LINC01298: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01298 Gene

Orthologs for LINC01298 Gene

Evolution for LINC01298 Gene

ENSEMBL:
Gene Tree for LINC01298 (if available)
TreeFam:
Gene Tree for LINC01298 (if available)

No data available for Orthologs for LINC01298 Gene

Paralogs for LINC01298 Gene

No data available for Paralogs for LINC01298 Gene

Variants for LINC01298 Gene

Sequence variations from dbSNP and Humsavar for LINC01298 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs111246127 -- 95,214,955(+) CTTGC(C/T)TCAGA intron-variant
rs111317428 -- 95,213,570(+) AGGCT(-/GGAGTGCA)GTGGC intron-variant
rs111902528 -- 95,213,439(+) CCCCC(-/T)CCGCC intron-variant
rs112031257 -- 95,217,572(+) TGGTG(C/G)TGCGC upstream-variant-2KB
rs112130031 -- 95,211,766(+) TTTAT(A/C)AAGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01298 Gene

Variant ID Type Subtype PubMed ID
esv23589 CNV gain 19812545
esv988068 CNV deletion 20482838
nsv465741 CNV loss 19166990
nsv516035 CNV gain+loss 19592680
nsv523655 CNV loss 19592680
nsv611758 CNV loss 21841781
nsv611759 CNV loss 21841781
nsv6315 CNV deletion 18451855

Relevant External Links for LINC01298 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01298

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01298 Gene

Disorders for LINC01298 Gene

Relevant External Links for LINC01298

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01298

No disorders were found for LINC01298 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01298 Gene

Publications for LINC01298 Gene

No publications were found for LINC01298 Gene.

Products for LINC01298 Gene

Sources for LINC01298 Gene

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