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Aliases for LINC01278 Gene

Subcategory (RNA class) for LINC01278 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01278 Gene

  • Long Intergenic Non-Protein Coding RNA 1278 2 3 5

External Ids for LINC01278 Gene

Summaries for LINC01278 Gene

GeneCards Summary for LINC01278 Gene

LINC01278 (Long Intergenic Non-Protein Coding RNA 1278) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01278 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01278 Gene

Genomics for LINC01278 Gene

Regulatory Elements for LINC01278 Gene

Enhancers for LINC01278 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH063560 0.9 ENCODE 0.7 -0.1 -146 1.8 HDAC1 TBP PKNOX1 ARID4B SIN3A ZNF2 ZBTB40 RAD21 RFX5 YY1 LINC01278 ARHGEF9-IT1
GH0XH063503 0.6 Ensembl ENCODE 0.2 +57.3 57283 1.2 PRDM1 LINC01278 PIR59801
GH0XH063513 0.6 Ensembl ENCODE 0.2 +46.6 46622 1.2 YY1 LINC01278 PIR59801
GH0XH063433 0.9 ENCODE 0.1 +126.8 126777 2.3 PKNOX1 YY1 TCF12 ZNF766 EGR1 ZHX1 CAVIN1 ZBTB11 ZC3H11A HDAC8 LOC100421109 SPIN4-AS1 MTMR8 PIR59801 LINC01278
GH0XH063581 0.2 ENCODE 0.3 -20.5 -20505 0.2 LINC01278 ARHGEF9-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01278 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01278 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000246836 270 2799 HDAC1 TBP PKNOX1 ARID4B SIN3A ZNF2 ZBTB40 RAD21 RFX5 YY1

Genomic Locations for LINC01278 Gene

Genomic Locations for LINC01278 Gene
217,845 bases
Minus strand

Genomic View for LINC01278 Gene

Genes around LINC01278 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01278 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01278 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01278 Gene

Proteins for LINC01278 Gene

Post-translational modifications for LINC01278 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01278 Gene

Domains & Families for LINC01278 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01278 Gene

Function for LINC01278 Gene

Phenotypes From GWAS Catalog for LINC01278 Gene

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01278 Gene

Localization for LINC01278 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01278 Gene

Pathways & Interactions for LINC01278 Gene

SuperPathways for LINC01278 Gene

No Data Available

Interacting Proteins for LINC01278 Gene

Gene Ontology (GO) - Biological Process for LINC01278 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01278 Gene

Drugs & Compounds for LINC01278 Gene

No Compound Related Data Available

Transcripts for LINC01278 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01278 Gene

No ASD Table

Relevant External Links for LINC01278 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01278 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01278 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01278 Gene:

genes like me logo Genes that share expression patterns with LINC01278: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01278 Gene

Orthologs for LINC01278 Gene

Evolution for LINC01278 Gene

Gene Tree for LINC01278 (if available)
Gene Tree for LINC01278 (if available)

No data available for Orthologs for LINC01278 Gene

Paralogs for LINC01278 Gene

No data available for Paralogs for LINC01278 Gene

Variants for LINC01278 Gene

Sequence variations from dbSNP and Humsavar for LINC01278 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs10047001 -- 63,507,212(+) GGAAG(C/T)GAGTT intron-variant
rs111245393 -- 63,485,803(+) GTATG(C/T)TCGTC intron-variant
rs111246956 -- 63,432,591(+) TTGAG(A/G)GCGGC intron-variant
rs111269649 -- 63,562,600(+) GGAAA(A/T)GATAA upstream-variant-2KB
rs111277389 -- 63,501,384(+) TTAGA(A/G)TGCCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01278 Gene

Variant ID Type Subtype PubMed ID
esv1584074 OTHER inversion 17803354

Relevant External Links for LINC01278 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01278 Gene

Disorders for LINC01278 Gene

Relevant External Links for LINC01278

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for LINC01278 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01278 Gene

Publications for LINC01278 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for LINC01278 Gene

Sources for LINC01278 Gene

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