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Aliases for LINC01252 Gene

Subcategory (RNA class) for LINC01252 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01252 Gene

  • Long Intergenic Non-Protein Coding RNA 1252 2 3 5

External Ids for LINC01252 Gene

Previous GeneCards Identifiers for LINC01252 Gene

  • GC12P011706

Summaries for LINC01252 Gene

GeneCards Summary for LINC01252 Gene

LINC01252 (Long Intergenic Non-Protein Coding RNA 1252) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01252 Gene

Genomics for LINC01252 Gene

Regulatory Elements for LINC01252 Gene

Enhancers for LINC01252 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G011169 1.1 ENCODE 53.1 -376.6 -376589 3.0 PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 LINC01252 TAS2R64P PRR4 TAS2R15P TAS2R14 ENSG00000256712
GH12G010891 1 ENCODE 39.5 -655.9 -655862 1.2 FOXA2 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 SP5 NFYC MIER2 PRR4 LINC01252 TAS2R8 TAS2R7 TAS2R12P GC12P010842
GH12G012032 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +485.1 485052 2.0 ELF3 PKNOX1 ARID4B ZNF2 RAD21 ETS1 SCRT2 ZNF143 RELB ETV6 BCL2L14 LINC01252 RNU7-60P ETV6 GC12P012010
GH12G011580 1.4 Ensembl ENCODE dbSUPER 11.8 +32.8 32771 1.6 TBP NFIB BMI1 ZNF2 RAD21 ZNF143 FOS ETV6 IKZF2 CREM ETV6 LINC01252 RNU7-60P ENSG00000256237
GH12G011711 1.7 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +164.0 163954 0.8 ELF3 SOX13 FOXA2 SAP130 RARA NCOR1 NR2F6 CREM GATAD2A SOX5 ETV6 RNU7-60P LINC01252 BCL2L14 GC12M011721 PIR53480
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01252 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01252 Gene

Chromosome:
12
Start:
11,548,030 bp from pter
End:
11,590,369 bp from pter
Size:
42,340 bases
Orientation:
Plus strand

Genomic View for LINC01252 Gene

Genes around LINC01252 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01252 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01252 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01252 Gene

Proteins for LINC01252 Gene

Post-translational modifications for LINC01252 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01252 Gene

Domains & Families for LINC01252 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01252 Gene

Function for LINC01252 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01252 Gene

Localization for LINC01252 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01252 Gene

Pathways & Interactions for LINC01252 Gene

SuperPathways for LINC01252 Gene

No Data Available

Interacting Proteins for LINC01252 Gene

Gene Ontology (GO) - Biological Process for LINC01252 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01252 Gene

Drugs & Compounds for LINC01252 Gene

No Compound Related Data Available

Transcripts for LINC01252 Gene

mRNA/cDNA for LINC01252 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01252 Gene

No ASD Table

Relevant External Links for LINC01252 Gene

GeneLoc Exon Structure for
LINC01252
ECgene alternative splicing isoforms for
LINC01252

Expression for LINC01252 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01252 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01252 Gene:

LINC01252
genes like me logo Genes that share expression patterns with LINC01252: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01252 Gene

Orthologs for LINC01252 Gene

Evolution for LINC01252 Gene

ENSEMBL:
Gene Tree for LINC01252 (if available)
TreeFam:
Gene Tree for LINC01252 (if available)

No data available for Orthologs for LINC01252 Gene

Paralogs for LINC01252 Gene

No data available for Paralogs for LINC01252 Gene

Variants for LINC01252 Gene

Sequence variations from dbSNP and Humsavar for LINC01252 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000359800 -- 11,554,964(+) AGATA(C/G)TTTAG intron-variant
rs1000360300 -- 11,560,714(+) AGATA(C/T)GTCTG intron-variant
rs1000473384 -- 11,560,948(+) ATTAC(C/T)CACTG intron-variant
rs1000884356 -- 11,549,734(+) CCACC(A/C)TGCCC intron-variant
rs1001003590 -- 11,547,316(+) CAGGG(C/G)CTGCG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LINC01252 Gene

Variant ID Type Subtype PubMed ID
dgv2382n54 CNV gain 21841781
esv2759879 CNV loss 17122850
esv3892143 CNV gain 25118596
nsv1046355 CNV loss 25217958
nsv428272 CNV gain+loss 18775914
nsv469112 CNV gain 19166990

Relevant External Links for LINC01252 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01252

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01252 Gene

Disorders for LINC01252 Gene

Relevant External Links for LINC01252

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01252

No disorders were found for LINC01252 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01252 Gene

Publications for LINC01252 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for LINC01252 Gene

Sources for LINC01252 Gene

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