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Aliases for LINC01194 Gene

Subcategory (RNA class) for LINC01194 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01194 Gene

  • Long Intergenic Non-Protein Coding RNA 1194 2 3 5
  • Cancer/Testis Antigen 49 (Non-Protein Coding) 3
  • Cancer/Testis Antigen 49 2
  • Tumor Antigen Gene 2
  • Tumor Antigen 3
  • CT49 3
  • TAG 3

External Ids for LINC01194 Gene

Previous HGNC Symbols for LINC01194 Gene

  • CT49

Summaries for LINC01194 Gene

GeneCards Summary for LINC01194 Gene

LINC01194 (Long Intergenic Non-Protein Coding RNA 1194) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01194 include Mesothelioma, Somatic.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01194 Gene

Genomics for LINC01194 Gene

Regulatory Elements for LINC01194 Gene

Enhancers for LINC01194 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around LINC01194 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01194 Gene

Chromosome:
5
Start:
12,574,857 bp from pter
End:
12,805,183 bp from pter
Size:
230,327 bases
Orientation:
Plus strand

Genomic View for LINC01194 Gene

Genes around LINC01194 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01194 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01194 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01194 Gene

Proteins for LINC01194 Gene

Post-translational modifications for LINC01194 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01194 Gene

Domains & Families for LINC01194 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01194 Gene

Function for LINC01194 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01194 Gene

Localization for LINC01194 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01194 Gene

Pathways & Interactions for LINC01194 Gene

SuperPathways for LINC01194 Gene

No Data Available

Interacting Proteins for LINC01194 Gene

Gene Ontology (GO) - Biological Process for LINC01194 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01194 Gene

Drugs & Compounds for LINC01194 Gene

(11) Drugs for LINC01194 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(12) Additional Compounds for LINC01194 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with LINC01194: view

Transcripts for LINC01194 Gene

mRNA/cDNA for LINC01194 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01194 Gene

No ASD Table

Relevant External Links for LINC01194 Gene

GeneLoc Exon Structure for
LINC01194
ECgene alternative splicing isoforms for
LINC01194

Expression for LINC01194 Gene

mRNA expression in normal human tissues for LINC01194 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01194 Gene

This gene is overexpressed in Testis (x53.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC01194 Gene:

LINC01194
genes like me logo Genes that share expression patterns with LINC01194: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01194 Gene

Orthologs for LINC01194 Gene

Evolution for LINC01194 Gene

ENSEMBL:
Gene Tree for LINC01194 (if available)
TreeFam:
Gene Tree for LINC01194 (if available)

No data available for Orthologs for LINC01194 Gene

Paralogs for LINC01194 Gene

No data available for Paralogs for LINC01194 Gene

Variants for LINC01194 Gene

Sequence variations from dbSNP and Humsavar for LINC01194 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs3925040 -- 12,657,601(+) TAGTA(C/T)AGTAA intron-variant
rs4247241 -- 12,587,152(+) AATAA(A/C)ATACA intron-variant
rs4354041 -- 12,577,426(+) cattg(G/T)gcata intron-variant
rs4354042 -- 12,577,459(+) aattt(A/T)aaaaa intron-variant
rs4371755 -- 12,585,960(+) cagaa(A/G)tgctg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01194 Gene

Variant ID Type Subtype PubMed ID
dgv133e203 CNV loss 21179565
dgv1580e212 CNV loss 25503493
dgv5571n100 CNV loss 25217958
dgv5572n100 CNV loss 25217958
dgv5573n100 CNV loss 25217958
dgv5574n100 CNV gain 25217958
dgv5575n100 CNV gain 25217958
dgv691n27 CNV loss 19166990
dgv9585n54 CNV loss 21841781
dgv9586n54 CNV loss 21841781
dgv9587n54 CNV loss 21841781
dgv9588n54 CNV gain 21841781
dgv9589n54 CNV loss 21841781
esv1040158 CNV deletion 17803354
esv1717709 CNV insertion 17803354
esv23324 CNV loss 19812545
esv2656953 CNV deletion 23128226
esv2659106 CNV deletion 23128226
esv2669914 CNV deletion 23128226
esv2671182 CNV deletion 23128226
esv2674196 CNV deletion 23128226
esv2729783 CNV deletion 23290073
esv2759324 CNV gain 17122850
esv2760947 CNV gain+loss 21179565
esv2763928 CNV gain+loss 21179565
esv3065424 CNV deletion 24192839
esv3565541 CNV deletion 23714750
esv3569988 CNV loss 25503493
esv3569991 CNV loss 25503493
esv3575818 CNV gain 25503493
esv3604042 CNV loss 21293372
esv3604043 CNV loss 21293372
esv3604044 CNV loss 21293372
esv3604045 CNV loss 21293372
esv3604046 CNV loss 21293372
esv3604047 CNV loss 21293372
esv3604048 CNV loss 21293372
esv3604049 CNV loss 21293372
esv3604051 CNV loss 21293372
esv3894131 CNV gain 25118596
esv988401 CNV deletion 20482838
nsv1015506 CNV loss 25217958
nsv1018259 CNV gain 25217958
nsv1018954 CNV loss 25217958
nsv1019274 CNV gain+loss 25217958
nsv1020923 CNV gain 25217958
nsv1023259 CNV loss 25217958
nsv1027379 CNV gain 25217958
nsv1030511 CNV gain 25217958
nsv1031812 CNV loss 25217958
nsv1034539 CNV loss 25217958
nsv10665 CNV gain 18304495
nsv1073439 CNV deletion 25765185
nsv1114651 CNV deletion 24896259
nsv1128143 CNV deletion 24896259
nsv1131872 CNV deletion 24896259
nsv1161210 CNV deletion 26073780
nsv1161211 CNV deletion 26073780
nsv428463 CNV loss 18775914
nsv436981 CNV loss 16327808
nsv461978 CNV loss 19166990
nsv470990 CNV gain 18288195
nsv4717 CNV insertion 18451855
nsv4718 CNV insertion 18451855
nsv4719 CNV deletion 18451855
nsv474587 CNV novel sequence insertion 20440878
nsv475011 CNV novel sequence insertion 20440878
nsv478126 CNV novel sequence insertion 20440878
nsv479623 CNV novel sequence insertion 20440878
nsv479720 CNV novel sequence insertion 20440878
nsv480446 CNV novel sequence insertion 20440878
nsv480903 CNV novel sequence insertion 20440878
nsv509054 CNV insertion 20534489
nsv510897 OTHER complex 20534489
nsv516405 CNV loss 19592680
nsv520673 CNV loss 19592680
nsv597157 CNV loss 21841781
nsv597158 CNV loss 21841781
nsv597159 CNV loss 21841781
nsv597160 CNV loss 21841781
nsv597162 CNV loss 21841781
nsv597165 CNV loss 21841781
nsv597166 CNV loss 21841781
nsv597168 CNV loss 21841781
nsv597180 CNV gain 21841781
nsv818316 CNV loss 17921354
nsv823004 CNV gain 20364138
nsv830206 CNV gain 17160897

Relevant External Links for LINC01194 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01194

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01194 Gene

Disorders for LINC01194 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01194 Gene - From: Novoseek

Disorder Aliases PubMed IDs
mesothelioma, somatic
  • mesothelioma, malignant
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for LINC01194

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01194
genes like me logo Genes that share disorders with LINC01194: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01194 Gene

Publications for LINC01194 Gene

  1. Identification of novel and widely expressed cancer/testis gene isoforms that elicit spontaneous cytotoxic T-lymphocyte reactivity to melanoma. (PMID: 14871852) Hogan K.T. … Slingluff C.L. (Cancer Res. 2004) 2 3 65
  2. Induction of chromosomal instability in colonic cells by the human polyomavirus JC virus. (PMID: 14612521) Ricciardiello L. … Bazzoli F. (Cancer Res. 2003) 3 22 65
  3. Large T antigen promotes JC virus replication in G2-arrested cells by inducing ATM- and ATR-mediated G2 checkpoint signaling. (PMID: 19903823) Orba Y. … Sawa H. (J. Biol. Chem. 2010) 22 65
  4. Cross-talk between T-Ag presence and pRb family and p53/p73 signaling in mouse and human medulloblastoma. (PMID: 20336668) Caracciolo V. … Giordano A. (J. Cell. Biochem. 2010) 22 65
  5. Treatment of ovarian cancer cell lines with 5-aza-2'-deoxycytidine upregulates the expression of cancer-testis antigens and class I major histocompatibility complex-encoded molecules. (PMID: 18791715) Adair S.J. … Hogan K.T. (Cancer Immunol. Immunother. 2009) 3 65

Products for LINC01194 Gene

Sources for LINC01194 Gene

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