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Aliases for LINC01194 Gene

Subcategory (RNA class) for LINC01194 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for LINC01194 Gene

  • Long Intergenic Non-Protein Coding RNA 1194 2 3
  • Cancer/Testis Antigen 49 (Non-Protein Coding) 3
  • Cancer/Testis Antigen 49 2
  • Tumor Antigen Gene 2
  • Tumor Antigen 3
  • CT49 3
  • TAG 3

External Ids for LINC01194 Gene

ORGUL Members for LINC01194 Gene

Previous HGNC Symbols for LINC01194 Gene

  • CT49

Summaries for LINC01194 Gene

GeneCards Summary for LINC01194 Gene

LINC01194 (Long Intergenic Non-Protein Coding RNA 1194) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01194 include pineocytoma.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01194 Gene

Genomics for LINC01194 Gene

Genomic Location for LINC01194 Gene

Start:
12,574,857 bp from pter
End:
12,805,183 bp from pter
Size:
230,327 bases
Orientation:
Plus strand

Genomic View for LINC01194 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC01194 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01194 Gene

No data available for Regulatory Elements for LINC01194 Gene

Proteins for LINC01194 Gene

Post-translational modifications for LINC01194 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01194 Gene

Domains for LINC01194 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01194 Gene

Function for LINC01194 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC01194 Gene

Localization for LINC01194 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01194 Gene

Pathways for LINC01194 Gene

SuperPathways for LINC01194 Gene

No Data Available

Interacting Proteins for LINC01194 Gene

Gene Ontology (GO) - Biological Process for LINC01194 Gene

None

No data available for Pathways by source for LINC01194 Gene

Compounds for LINC01194 Gene

(23) Novoseek inferred chemical compound relationships for LINC01194 Gene

Compound -log(P) Hits PubMed IDs
2,5-oligoadenylate 27.4 1
5-aza-2deoxycytidine 24.6 1
paraffin 12 2
deoxyribonucleic acid 3.78 1
progesterone 3.02 1
genes like me logo Genes that share compounds with LINC01194: view

Transcripts for LINC01194 Gene

mRNA/cDNA for LINC01194 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01194 Gene

No ASD Table

Relevant External Links for LINC01194 Gene

GeneLoc Exon Structure for
LINC01194
ECgene alternative splicing isoforms for
LINC01194

Expression for LINC01194 Gene

mRNA expression in normal human tissues for LINC01194 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01194 Gene

This gene is overexpressed in Testis (53.0).
genes like me logo Genes that share expressions with LINC01194: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for LINC01194 Gene

Orthologs for LINC01194 Gene

Evolution for LINC01194 Gene

ENSEMBL:
Gene Tree for LINC01194 (if available)
TreeFam:
Gene Tree for LINC01194 (if available)

No data available for Orthologs for LINC01194 Gene

Paralogs for LINC01194 Gene

No data available for Paralogs for LINC01194 Gene

Variants for LINC01194 Gene

Relevant External Links for LINC01194 Gene

HapMap Linkage Disequilibrium report
LINC01194

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for LINC01194 Gene

Disorders for LINC01194 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for LINC01194 Gene including...

Search for LINC01194 Gene in MalaCards »

(58) Novoseek inferred disease relationships for LINC01194 Gene

Disease -log(P) Hits PubMed IDs
mesothelioma 70.2 9
malignant mesothelioma 67.3 2
pleural malignant mesothelioma 61.4 2
choroid plexus tumors 59.5 1
retinoblastoma 59.4 9
genes like me logo Genes that share disorders with LINC01194: view

No data available for UniProtKB/Swiss-Prot for LINC01194 Gene

Publications for LINC01194 Gene

  1. Induction of chromosomal instability in colonic cells by the human polyomavirus JC virus. (PMID: 14612521) Ricciardiello L. … Bazzoli F. (Cancer Res. 2003) 3 23
  2. Identification of novel and widely expressed cancer/testis gene isoforms that elicit spontaneous cytotoxic T-lymphocyte reactivity to melanoma. (PMID: 14871852) Hogan K.T. … Slingluff C.L. (Cancer Res. 2004) 2 3
  3. The TAG family of cancer/testis antigens is widely expressed in a variety of malignancies and gives rise to HLA-A2-restricted epitopes. (PMID: 18157007) Adair S.J. … Hogan K.T. (J. Immunother. 2008) 3
  4. Treatment of ovarian cancer cell lines with 5-aza-2'-deoxycytidine upregulates the expression of cancer-testis antigens and class I major histocompatibility complex-encoded molecules. (PMID: 18791715) Adair S.J. … Hogan K.T. (Cancer Immunol. Immunother. 2009) 3
  5. SV40 Tag DNA sequences, present in a small proportion of human hepatocellular carcinomas, are associated with reduced survival. (PMID: 14645347) Wong N.A. … Harrison D.J. (J. Clin. Pathol. 2003) 23

Products for LINC01194 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01194
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC01194
    • Block miRNA regulation of LINC01194 using miScript Target Protectors

    Sources for LINC01194 Gene

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