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Aliases for LINC01194 Gene

Subcategory (RNA class) for LINC01194 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01194 Gene

  • Long Intergenic Non-Protein Coding RNA 1194 2 3 5
  • Cancer/Testis Antigen 49 (Non-Protein Coding) 3
  • Cancer/Testis Antigen 49 2
  • Tumor Antigen Gene 2
  • Tumor Antigen 3
  • CT49 3
  • TAG 3

External Ids for LINC01194 Gene

Previous HGNC Symbols for LINC01194 Gene

  • CT49

Summaries for LINC01194 Gene

GeneCards Summary for LINC01194 Gene

LINC01194 (Long Intergenic Non-Protein Coding RNA 1194) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01194 include Malignant Pleural Mesothelioma and Pineocytoma.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01194 Gene

Genomics for LINC01194 Gene

Regulatory Elements for LINC01194 Gene

Enhancers for LINC01194 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around LINC01194 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01194 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around LINC01194 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01194 Gene

Chromosome:
5
Start:
12,574,857 bp from pter
End:
12,805,183 bp from pter
Size:
230,327 bases
Orientation:
Plus strand

Genomic View for LINC01194 Gene

Genes around LINC01194 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01194 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01194 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01194 Gene

Proteins for LINC01194 Gene

Post-translational modifications for LINC01194 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01194 Gene

Domains & Families for LINC01194 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01194 Gene

Function for LINC01194 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01194 Gene

Localization for LINC01194 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01194 Gene

Pathways & Interactions for LINC01194 Gene

SuperPathways for LINC01194 Gene

No Data Available

Interacting Proteins for LINC01194 Gene

Gene Ontology (GO) - Biological Process for LINC01194 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01194 Gene

Drugs & Compounds for LINC01194 Gene

(11) Drugs for LINC01194 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(12) Additional Compounds for LINC01194 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with LINC01194: view

Transcripts for LINC01194 Gene

mRNA/cDNA for LINC01194 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01194 Gene

No ASD Table

Relevant External Links for LINC01194 Gene

GeneLoc Exon Structure for
LINC01194
ECgene alternative splicing isoforms for
LINC01194

Expression for LINC01194 Gene

mRNA expression in normal human tissues for LINC01194 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01194 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with LINC01194: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LINC01194 Gene

Orthologs for LINC01194 Gene

Evolution for LINC01194 Gene

ENSEMBL:
Gene Tree for LINC01194 (if available)
TreeFam:
Gene Tree for LINC01194 (if available)

No data available for Orthologs for LINC01194 Gene

Paralogs for LINC01194 Gene

No data available for Paralogs for LINC01194 Gene

Variants for LINC01194 Gene

Sequence variations from dbSNP and Humsavar for LINC01194 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs6861430 -- 12,612,373(+) atttc(A/G/T)acctt intron-variant
rs6866217 -- 12,674,811(+) AATTA(C/T)AAAAA intron-variant
rs3925040 -- 12,657,601(+) TAGTA(C/T)AGTAA intron-variant
rs6868308 -- 12,662,798(+) ggtct(A/T)ttgca intron-variant
rs4247241 -- 12,587,152(+) AATAA(A/C)ATACA intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LINC01194 Gene

Disorders for LINC01194 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LINC01194 Gene - From: Novoseek and GeneCards

Disorder Aliases PubMed IDs
malignant pleural mesothelioma
  • malignant mesothelioma of pleura
pineocytoma
  • pinealoma
mesothelioma, somatic
  • malignant mesothelioma
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for LINC01194

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01194
genes like me logo Genes that share disorders with LINC01194: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01194 Gene

Publications for LINC01194 Gene

  1. Identification of novel and widely expressed cancer/testis gene isoforms that elicit spontaneous cytotoxic T-lymphocyte reactivity to melanoma. (PMID: 14871852) Hogan K.T. … Slingluff C.L. (Cancer Res. 2004) 2 3 67
  2. Induction of chromosomal instability in colonic cells by the human polyomavirus JC virus. (PMID: 14612521) Ricciardiello L. … Bazzoli F. (Cancer Res. 2003) 3 23
  3. Large T antigen promotes JC virus replication in G2-arrested cells by inducing ATM- and ATR-mediated G2 checkpoint signaling. (PMID: 19903823) Orba Y. … Sawa H. (J. Biol. Chem. 2010) 23
  4. Cross-talk between T-Ag presence and pRb family and p53/p73 signaling in mouse and human medulloblastoma. (PMID: 20336668) Caracciolo V. … Giordano A. (J. Cell. Biochem. 2010) 23
  5. Treatment of ovarian cancer cell lines with 5-aza-2'-deoxycytidine upregulates the expression of cancer-testis antigens and class I major histocompatibility complex-encoded molecules. (PMID: 18791715) Adair S.J. … Hogan K.T. (Cancer Immunol. Immunother. 2009) 3

Products for LINC01194 Gene

Sources for LINC01194 Gene

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