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Aliases for LINC01193 Gene

Subcategory (RNA class) for LINC01193 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01193 Gene

  • Long Intergenic Non-Protein Coding RNA 1193 2 3
  • Cancer/Testis Antigen 60 (Non-Protein Coding) 3
  • Cancer/Testis Antigen 60 2
  • CT60 3

External Ids for LINC01193 Gene

Previous HGNC Symbols for LINC01193 Gene

  • CT60

Previous GeneCards Identifiers for LINC01193 Gene

  • GC15P021156

Summaries for LINC01193 Gene

GeneCards Summary for LINC01193 Gene

LINC01193 (Long Intergenic Non-Protein Coding RNA 1193) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01193 include sphenoid sinusitis and autoimmune disease of endocrine system.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01193 Gene

Genomics for LINC01193 Gene

Genomic Location for LINC01193 Gene

Chromosome:
15
Start:
20,940,438 bp from pter
End:
20,993,304 bp from pter
Size:
52,867 bases
Orientation:
Plus strand

Genomic View for LINC01193 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC01193 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01193 Gene

No data available for Regulatory Elements for LINC01193 Gene

Proteins for LINC01193 Gene

Post-translational modifications for LINC01193 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01193 Gene

Domains & Families for LINC01193 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01193 Gene

Function for LINC01193 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01193 Gene

Localization for LINC01193 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for LINC01193 Gene COMPARTMENTS Subcellular localization image for LINC01193 gene
Compartment Confidence
lysosome 2
vacuole 2
endosome 1
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LINC01193 Gene

Pathways & Interactions for LINC01193 Gene

SuperPathways for LINC01193 Gene

No Data Available

Interacting Proteins for LINC01193 Gene

Gene Ontology (GO) - Biological Process for LINC01193 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01193 Gene

Drugs & Compounds for LINC01193 Gene

No Compound Related Data Available

Transcripts for LINC01193 Gene

mRNA/cDNA for LINC01193 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01193 Gene

No ASD Table

Relevant External Links for LINC01193 Gene

GeneLoc Exon Structure for
LINC01193
ECgene alternative splicing isoforms for
LINC01193

Expression for LINC01193 Gene

mRNA expression in normal human tissues for LINC01193 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01193 Gene

This gene is overexpressed in Testis (x50.0).
genes like me logo Genes that share expression patterns with LINC01193: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LINC01193 Gene

Orthologs for LINC01193 Gene

Evolution for LINC01193 Gene

ENSEMBL:
Gene Tree for LINC01193 (if available)
TreeFam:
Gene Tree for LINC01193 (if available)

No data available for Orthologs for LINC01193 Gene

Paralogs for LINC01193 Gene

No data available for Paralogs for LINC01193 Gene

Variants for LINC01193 Gene

Sequence variations from dbSNP and Humsavar for LINC01193 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs28374642 -- 20,941,771(+) AGCAG(A/G)TGGCC intron-variant
rs28372149 -- 20,961,620(+) TGTGG(C/T)GATTC intron-variant
rs28366887 -- 20,960,095(+) TCTCA(A/G)ACAAC intron-variant
rs17134427 -- 20,988,783(+) GCTTC(A/G)AAGGC intron-variant
rs13379822 -- 20,948,007(+) CAACT(C/T)GATTC intron-variant

Relevant External Links for LINC01193 Gene

HapMap Linkage Disequilibrium report
LINC01193

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01193 Gene

Disorders for LINC01193 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LINC01193 Gene - From: DISEASES

Disorder Aliases PubMed IDs
sphenoid sinusitis
  • sphenoidal sinusitis
autoimmune disease of endocrine system
juvenile glaucoma
  • glaucoma of childhood
- elite association

Relevant External Links for LINC01193

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01193
genes like me logo Genes that share disorders with LINC01193: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01193 Gene

Publications for LINC01193 Gene

  1. Identification of cancer/testis-antigen genes by massively parallel signature sequencing. (PMID: 15905330) Chen Y.-T. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2005) 2 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

Products for LINC01193 Gene

Sources for LINC01193 Gene

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