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Aliases for LINC01193 Gene

Subcategory (RNA class) for LINC01193 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01193 Gene

  • Long Intergenic Non-Protein Coding RNA 1193 2 3 5
  • Cancer/Testis Antigen 60 (Non-Protein Coding) 3
  • Cancer/Testis Antigen 60 2
  • CT60 3

External Ids for LINC01193 Gene

Previous HGNC Symbols for LINC01193 Gene

  • CT60

Previous GeneCards Identifiers for LINC01193 Gene

  • GC15P021156

Summaries for LINC01193 Gene

GeneCards Summary for LINC01193 Gene

LINC01193 (Long Intergenic Non-Protein Coding RNA 1193) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01193 include Sphenoid Sinusitis and Autoimmune Disease Of Endocrine System.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01193 Gene

Genomics for LINC01193 Gene

Genomic Location for LINC01193 Gene

Chromosome:
15
Start:
20,940,438 bp from pter
End:
20,993,304 bp from pter
Size:
52,867 bases
Orientation:
Plus strand

Genomic View for LINC01193 Gene

Genes around LINC01193 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01193 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01193 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01193 Gene

No data available for Regulatory Elements for LINC01193 Gene

Proteins for LINC01193 Gene

Post-translational modifications for LINC01193 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01193 Gene

Domains & Families for LINC01193 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01193 Gene

Function for LINC01193 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01193 Gene

Localization for LINC01193 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01193 gene
Compartment Confidence
lysosome 2
extracellular 1
endosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LINC01193 Gene

Pathways & Interactions for LINC01193 Gene

SuperPathways for LINC01193 Gene

No Data Available

Interacting Proteins for LINC01193 Gene

Gene Ontology (GO) - Biological Process for LINC01193 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01193 Gene

Drugs & Compounds for LINC01193 Gene

No Compound Related Data Available

Transcripts for LINC01193 Gene

mRNA/cDNA for LINC01193 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01193 Gene

No ASD Table

Relevant External Links for LINC01193 Gene

GeneLoc Exon Structure for
LINC01193
ECgene alternative splicing isoforms for
LINC01193

Expression for LINC01193 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01193 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01193 Gene

This gene is overexpressed in Testis (x50.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC01193 Gene:

LINC01193
genes like me logo Genes that share expression patterns with LINC01193: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01193 Gene

Orthologs for LINC01193 Gene

Evolution for LINC01193 Gene

ENSEMBL:
Gene Tree for LINC01193 (if available)
TreeFam:
Gene Tree for LINC01193 (if available)

No data available for Orthologs for LINC01193 Gene

Paralogs for LINC01193 Gene

No data available for Paralogs for LINC01193 Gene

Variants for LINC01193 Gene

Sequence variations from dbSNP and Humsavar for LINC01193 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000102566 -- 20,938,543(+) GCAAT(A/T)AACAC upstream-variant-2KB
rs1000278175 -- 20,966,272(+) CTGGC(C/T)AACAC intron-variant
rs1000393277 -- 20,963,439(+) TTACC(G/T)TAATA intron-variant
rs1000579112 -- 20,991,941(+) AAAGC(C/G)ATCCA nc-transcript-variant
rs1000863862 -- 20,992,421(+) TGCCC(C/T)GTCAG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01193 Gene

Variant ID Type Subtype PubMed ID
dgv1360e59 CNV duplication 20981092
dgv1n1 OTHER inversion 15895083
dgv2174n100 CNV gain 25217958
dgv2175n100 CNV gain 25217958
dgv2179n100 CNV gain 25217958
dgv2181n100 CNV gain 25217958
dgv2182n100 CNV gain 25217958
dgv2183n100 CNV loss 25217958
dgv2188n100 CNV loss 25217958
dgv2189n100 CNV gain+loss 25217958
dgv2190n100 CNV gain+loss 25217958
dgv2191n100 CNV gain+loss 25217958
dgv2192n100 CNV loss 25217958
dgv2193n100 CNV gain+loss 25217958
dgv2211n100 CNV loss 25217958
dgv2212n100 CNV gain 25217958
dgv2213n100 CNV loss 25217958
dgv2214n100 CNV gain 25217958
dgv2222n100 CNV gain+loss 25217958
dgv2232n100 CNV loss 25217958
dgv2237n100 CNV gain 25217958
dgv2238n100 CNV gain 25217958
dgv2246n100 CNV gain+loss 25217958
dgv2250n100 CNV gain+loss 25217958
dgv2278n100 CNV gain 25217958
dgv2279n100 CNV loss 25217958
dgv2280n100 CNV loss 25217958
dgv2281n100 CNV gain+loss 25217958
dgv2282n100 CNV gain 25217958
dgv2283n100 CNV gain 25217958
dgv2284n100 CNV gain 25217958
dgv2287n100 CNV gain+loss 25217958
dgv2288n100 CNV gain 25217958
dgv2290n100 CNV gain+loss 25217958
dgv2293n100 CNV loss 25217958
dgv2297n100 CNV gain 25217958
dgv2298n100 CNV gain+loss 25217958
dgv2300n100 CNV loss 25217958
dgv2301n100 CNV loss 25217958
dgv2304n100 CNV gain 25217958
dgv2308n100 CNV loss 25217958
dgv2309n100 CNV gain 25217958
dgv2312n100 CNV gain 25217958
dgv2313n100 CNV loss 25217958
dgv2317n100 CNV gain 25217958
dgv2320n100 CNV loss 25217958
dgv2321n100 CNV gain+loss 25217958
dgv2324n100 CNV gain 25217958
dgv2325n100 CNV gain+loss 25217958
dgv2326n100 CNV gain 25217958
dgv2327n100 CNV gain 25217958
dgv2328n100 CNV gain 25217958
dgv2329n100 CNV loss 25217958
dgv2330n100 CNV loss 25217958
dgv2331n100 CNV gain+loss 25217958
dgv2332n100 CNV gain 25217958
dgv2333n100 CNV loss 25217958
dgv2334n100 CNV gain 25217958
dgv2335n100 CNV loss 25217958
dgv2336n100 CNV loss 25217958
dgv2337n100 CNV loss 25217958
dgv2339n100 CNV gain+loss 25217958
dgv2340n100 CNV gain+loss 25217958
dgv2341n100 CNV gain 25217958
dgv2343n100 CNV gain+loss 25217958
dgv2344n100 CNV loss 25217958
dgv2345n100 CNV gain 25217958
dgv2346n100 CNV loss 25217958
dgv2347n100 CNV loss 25217958
dgv2348n100 CNV gain+loss 25217958
dgv2350n100 CNV loss 25217958
dgv2351n100 CNV gain 25217958
dgv2352n100 CNV loss 25217958
dgv2353n100 CNV loss 25217958
dgv2354n100 CNV loss 25217958
dgv2355n100 CNV gain 25217958
dgv2356n100 CNV loss 25217958
dgv2357n100 CNV gain+loss 25217958
dgv2358n100 CNV loss 25217958
dgv2360n100 CNV gain+loss 25217958
dgv2361n100 CNV gain+loss 25217958
dgv2362n100 CNV loss 25217958
dgv2363n100 CNV loss 25217958
dgv2364n100 CNV gain 25217958
dgv2365n100 CNV gain+loss 25217958
dgv4162n54 CNV loss 21841781
dgv4164n54 CNV loss 21841781
dgv4166n54 CNV gain 21841781
dgv4180n54 CNV gain 21841781
dgv4182n54 CNV loss 21841781
dgv418n67 CNV gain 20364138
dgv419n67 CNV gain 20364138
dgv420n67 CNV gain 20364138
dgv4210n54 CNV gain 21841781
dgv4211n54 CNV gain 21841781
dgv4213n54 CNV loss 21841781
dgv4217n54 CNV loss 21841781
dgv4220n54 CNV gain+loss 21841781
dgv4221n54 CNV loss 21841781
dgv4222n54 CNV gain 21841781
dgv4223n54 CNV gain+loss 21841781
dgv4224n54 CNV loss 21841781
dgv4225n54 CNV loss 21841781
dgv4226n54 CNV loss 21841781
dgv4231n54 CNV gain 21841781
dgv4232n54 CNV gain 21841781
dgv4237n54 CNV loss 21841781
dgv4238n54 CNV gain 21841781
dgv4241n54 CNV loss 21841781
dgv4243n54 CNV loss 21841781
dgv4244n54 CNV loss 21841781
dgv4245n54 CNV loss 21841781
dgv4246n54 CNV loss 21841781
dgv4247n54 CNV loss 21841781
dgv4248n54 CNV loss 21841781
dgv4249n54 CNV loss 21841781
dgv4250n54 CNV loss 21841781
dgv43n16 CNV insertion 17901297
dgv91e55 CNV gain 17911159
dgv92e55 CNV gain 17911159
dgv93e55 CNV gain 17911159
dgv95e55 CNV loss 17911159
dgv96e55 CNV loss 17911159
esv1004259 OTHER inversion 20482838
esv21579 CNV gain+loss 19812545
esv2427986 CNV gain 19546169
esv2660419 CNV deletion 23128226
esv2751488 CNV loss 17911159
esv29956 CNV loss 18421352
esv33051 CNV gain+loss 17666407
esv3332168 CNV duplication 20981092
esv3338562 CNV duplication 20981092
esv3394097 CNV insertion 20981092
esv3400852 CNV duplication 20981092
esv3402955 CNV duplication 20981092
esv3414488 CNV duplication 20981092
esv3584679 CNV loss 24956385
esv3584832 CNV gain 24956385
esv3584854 CNV gain 24956385
esv3584865 CNV gain 24956385
esv3892595 CNV gain+loss 25118596
esv3892607 CNV gain 25118596
esv3892609 CNV gain 25118596
esv3892620 CNV gain+loss 25118596
esv3892621 CNV gain+loss 25118596
esv5710 CNV loss 19470904
esv7942 CNV loss 19470904
esv988919 CNV loss 20482838
nsv1045315 CNV loss 25217958
nsv1045895 CNV gain+loss 25217958
nsv1055063 CNV gain+loss 25217958
nsv1069832 CNV deletion 25765185
nsv1075472 CNV duplication 25765185
nsv1075881 CNV duplication 25765185
nsv1110250 CNV duplication 24896259
nsv1118546 CNV duplication 24896259
nsv1124695 CNV duplication 24896259
nsv1128712 CNV duplication 24896259
nsv1132398 CNV duplication 24896259
nsv1147645 CNV duplication 26484159
nsv1148638 CNV duplication 26484159
nsv1150328 CNV duplication 26484159
nsv1151952 CNV duplication 26484159
nsv1152090 CNV duplication 26484159
nsv1154074 CNV duplication 26484159
nsv1160218 CNV duplication 26073780
nsv1160227 CNV duplication 26073780
nsv1160228 CNV deletion 26073780
nsv1457 CNV deletion 18451855
nsv428296 CNV gain+loss 18775914
nsv433282 CNV loss 18776910
nsv433283 CNV loss 18776910
nsv436198 CNV deletion 17901297
nsv469803 CNV gain 16826518
nsv471675 CNV gain+loss 15918152
nsv476588 CNV novel sequence insertion 20440878
nsv511040 OTHER inversion 20534489
nsv514766 CNV gain+loss 21397061
nsv567312 CNV gain 21841781
nsv567597 CNV loss 21841781
nsv567604 CNV loss 21841781
nsv567636 CNV loss 21841781
nsv567641 CNV gain 21841781
nsv567669 CNV loss 21841781
nsv7260 OTHER inversion 18451855
nsv817667 CNV gain 17921354
nsv819612 CNV gain 19587683
nsv819770 CNV gain 19587683
nsv821678 CNV loss 15273396
nsv832916 CNV gain+loss 17160897
nsv9179 CNV gain+loss 18304495
nsv952320 CNV duplication 24416366
nsv952544 CNV duplication 24416366
nsv977630 OTHER complex 23825009

Relevant External Links for LINC01193 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01193

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01193 Gene

Disorders for LINC01193 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LINC01193 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
sphenoid sinusitis
  • sphenoidal sinusitis
autoimmune disease of endocrine system
juvenile glaucoma
  • glaucoma of childhood
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for LINC01193

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01193
genes like me logo Genes that share disorders with LINC01193: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01193 Gene

Publications for LINC01193 Gene

  1. Identification of cancer/testis-antigen genes by massively parallel signature sequencing. (PMID: 15905330) Chen Y.-T. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2005) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC01193 Gene

Sources for LINC01193 Gene

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