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Aliases for LINC01192 Gene

Subcategory (RNA class) for LINC01192 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01192 Gene

  • Long Intergenic Non-Protein Coding RNA 1192 2 3 5
  • Cancer/Testis Antigen 64 (Non-Protein Coding) 3
  • Cancer/Testis Antigen 64 2
  • CT64 3

External Ids for LINC01192 Gene

Previous HGNC Symbols for LINC01192 Gene

  • CT64

Previous GeneCards Identifiers for LINC01192 Gene

  • GC03M162847

Summaries for LINC01192 Gene

GeneCards Summary for LINC01192 Gene

LINC01192 (Long Intergenic Non-Protein Coding RNA 1192) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01192 Gene

Genomics for LINC01192 Gene

Regulatory Elements for LINC01192 Gene

Enhancers for LINC01192 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F163435 0.3 FANTOM5 0.2 -73.9 -73931 0.0 GC03M163472 LINC01192
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01192 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01192 Gene

Chromosome:
3
Start:
163,127,923 bp from pter
End:
163,361,563 bp from pter
Size:
233,641 bases
Orientation:
Minus strand

Genomic View for LINC01192 Gene

Genes around LINC01192 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01192 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01192 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01192 Gene

Proteins for LINC01192 Gene

Post-translational modifications for LINC01192 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01192 Gene

Domains & Families for LINC01192 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01192 Gene

Function for LINC01192 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01192 Gene

Localization for LINC01192 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01192 Gene

Pathways & Interactions for LINC01192 Gene

SuperPathways for LINC01192 Gene

No Data Available

Interacting Proteins for LINC01192 Gene

Gene Ontology (GO) - Biological Process for LINC01192 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01192 Gene

Transcripts for LINC01192 Gene

mRNA/cDNA for LINC01192 Gene

(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01192 Gene

No ASD Table

Relevant External Links for LINC01192 Gene

GeneLoc Exon Structure for
LINC01192
ECgene alternative splicing isoforms for
LINC01192

Expression for LINC01192 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01192 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01192 Gene

This gene is overexpressed in Testis (x53.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC01192 Gene:

LINC01192
genes like me logo Genes that share expression patterns with LINC01192: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01192 Gene

Orthologs for LINC01192 Gene

Evolution for LINC01192 Gene

ENSEMBL:
Gene Tree for LINC01192 (if available)
TreeFam:
Gene Tree for LINC01192 (if available)

No data available for Orthologs for LINC01192 Gene

Paralogs for LINC01192 Gene

No data available for Paralogs for LINC01192 Gene

Variants for LINC01192 Gene

Sequence variations from dbSNP and Humsavar for LINC01192 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10523907 -- 163,287,148(+) TGTGT(-/GTGTGTGTGT)ATATA intron-variant
rs10572327 -- 163,212,333(+) ATTTC(-/TTAT)TTATT intron-variant
rs10639483 -- 163,258,760(+) TATAT(-/AT)GTGTG intron-variant
rs10702785 -- 163,229,736(+) AGTAG(-/T/TTT/TTTT)TTTTT intron-variant
rs10804804 -- 163,223,563(+) TATTT(A/T)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01192 Gene

Variant ID Type Subtype PubMed ID
nsv997424 CNV loss 25217958
nsv954504 CNV deletion 24416366
nsv822323 CNV loss 20364138
nsv818184 CNV loss 17921354
nsv592414 CNV loss 21841781
nsv592413 CNV loss 21841781
nsv592410 CNV loss 21841781
nsv592201 CNV loss 21841781
nsv524743 CNV loss 19592680
nsv470994 CNV loss 18288195
nsv428424 CNV gain+loss 18775914
nsv1161001 CNV deletion 26073780
nsv1009583 CNV loss 25217958
nsv1004665 CNV loss 25217958
nsv1000394 CNV loss 25217958
esv3893803 CNV gain 25118596
esv3893802 CNV gain 25118596
esv3893800 CNV loss 25118596
esv3598451 CNV loss 21293372
esv3598448 CNV loss 21293372
esv34284 CNV loss 17911159
esv2763319 CNV loss 21179565
esv2762359 CNV loss 21179565
esv2759198 CNV loss 17122850
esv2751982 CNV gain 17911159
dgv8709n54 CNV loss 21841781
dgv626n27 CNV loss 19166990
dgv4968n100 CNV gain 25217958
dgv4967n100 CNV loss 25217958

Relevant External Links for LINC01192 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01192

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01192 Gene

Disorders for LINC01192 Gene

Relevant External Links for LINC01192

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01192

No disorders were found for LINC01192 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01192 Gene

Publications for LINC01192 Gene

  1. Identification of cancer/testis-antigen genes by massively parallel signature sequencing. (PMID: 15905330) Chen Y.-T. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2005) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  3. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. (PMID: 7566098) Adams M.D. … White O. (Nature 1995) 3 64

Products for LINC01192 Gene

Sources for LINC01192 Gene

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