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Aliases for LINC01160 Gene

Subcategory (RNA class) for LINC01160 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01160 Gene

  • Long Intergenic Non-Protein Coding RNA 1160 2 3 5

External Ids for LINC01160 Gene

Previous GeneCards Identifiers for LINC01160 Gene

  • GC01M112143

Summaries for LINC01160 Gene

GeneCards Summary for LINC01160 Gene

LINC01160 (Long Intergenic Non-Protein Coding RNA 1160) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01160 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01160 Gene

Genomics for LINC01160 Gene

Regulatory Elements for LINC01160 Gene

Enhancers for LINC01160 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H110870 1.7 FANTOM5 ENCODE dbSUPER 9.9 +731.7 731749 12 HDGF PKNOX1 ARNT ZNF766 CBX5 ZNF143 ZNF207 FOS JUNB REST CD53 LINC01160 DRAM2 KCNA3 LRIF1 ENSG00000261654
GH01H112388 1.5 Ensembl ENCODE dbSUPER 9.9 -781.8 -781815 3 PKNOX1 ATF1 ARID4B SIN3A DMAP1 ZNF2 ZNF143 FOS KLF7 ATF7 WNT2B CTTNBP2NL RHOC PPM1J LINC01160 GC01P112392 ENSG00000238761
GH01H111601 1.3 Ensembl ENCODE dbSUPER 6.9 +5.0 5000 4 HDGF PKNOX1 RB1 MAX BACH1 BATF RELA POLR2A EED ATF7 FAM212B RAP1A RNU6-151P KRT18P57 DDX20 C1orf162 LINC01160 PIFO TMIGD3
GH01H111345 0.9 ENCODE 9.9 +262.1 262132 1 PKNOX1 ARID4B SIN3A DMAP1 YY1 GLIS2 ZNF143 KLF7 ATF7 SP3 LINC01160 KCNA2 CHIAP3 LOC105378903
GH01H111618 1.7 FANTOM5 ENCODE dbSUPER 4.9 -11.9 -11889 4 HDGF PKNOX1 ARNT ARID4B SIN3A YY1 SLC30A9 ZNF766 GLIS2 ELK1 RAP1A KRT18P57 RNU6-151P WDR77 ATP5F1 FAM212B UBE2FP3 LINC01160 PIFO C1orf162
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01160 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01160 Gene

Chromosome:
1
Start:
111,599,007 bp from pter
End:
111,608,723 bp from pter
Size:
9,717 bases
Orientation:
Minus strand

Genomic View for LINC01160 Gene

Genes around LINC01160 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01160 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01160 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01160 Gene

Proteins for LINC01160 Gene

Post-translational modifications for LINC01160 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01160 Gene

Domains & Families for LINC01160 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01160 Gene

Function for LINC01160 Gene

Phenotypes From GWAS Catalog for LINC01160 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01160 Gene

Localization for LINC01160 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01160 Gene

Pathways & Interactions for LINC01160 Gene

SuperPathways for LINC01160 Gene

No Data Available

Interacting Proteins for LINC01160 Gene

Gene Ontology (GO) - Biological Process for LINC01160 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01160 Gene

Drugs & Compounds for LINC01160 Gene

No Compound Related Data Available

Transcripts for LINC01160 Gene

mRNA/cDNA for LINC01160 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01160 Gene

No ASD Table

Relevant External Links for LINC01160 Gene

GeneLoc Exon Structure for
LINC01160
ECgene alternative splicing isoforms for
LINC01160

Expression for LINC01160 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01160 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01160 Gene

This gene is overexpressed in Esophagus - Muscularis (x5.7), Esophagus - Gastroesophageal Junction (x5.5), and Colon - Sigmoid (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of LINC01160 Gene:

LINC01160
genes like me logo Genes that share expression patterns with LINC01160: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01160 Gene

Orthologs for LINC01160 Gene

Evolution for LINC01160 Gene

ENSEMBL:
Gene Tree for LINC01160 (if available)
TreeFam:
Gene Tree for LINC01160 (if available)

No data available for Orthologs for LINC01160 Gene

Paralogs for LINC01160 Gene

No data available for Paralogs for LINC01160 Gene

Variants for LINC01160 Gene

Sequence variations from dbSNP and Humsavar for LINC01160 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000620093 -- 111,606,745(+) GCAAG(C/G)CTCTG intron-variant
rs1000756727 -- 111,599,612(+) TATGA(C/T)TTGGT intron-variant, nc-transcript-variant
rs1000848136 -- 111,606,097(+) ACAGA(A/G)AAGCA intron-variant
rs1001043388 -- 111,598,788(+) AACAC(C/T)ATCTA intron-variant, downstream-variant-500B
rs1001151377 -- 111,606,434(+) ACTGT(A/G)GAAAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01160 Gene

Variant ID Type Subtype PubMed ID
nsv947444 CNV duplication 23825009

Relevant External Links for LINC01160 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01160

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01160 Gene

Disorders for LINC01160 Gene

Relevant External Links for LINC01160

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01160

No disorders were found for LINC01160 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01160 Gene

Publications for LINC01160 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LINC01160 Gene

Sources for LINC01160 Gene

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