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Aliases for LINC01135 Gene

Subcategory (RNA class) for LINC01135 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01135 Gene

  • Long Intergenic Non-Protein Coding RNA 1135 2 3 5

External Ids for LINC01135 Gene

Previous GeneCards Identifiers for LINC01135 Gene

  • GC01P059253

Summaries for LINC01135 Gene

GeneCards Summary for LINC01135 Gene

LINC01135 (Long Intergenic Non-Protein Coding RNA 1135) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01135 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01135 Gene

Genomics for LINC01135 Gene

Regulatory Elements for LINC01135 Gene

Enhancers for LINC01135 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H058894 2.1 FANTOM5 Ensembl ENCODE dbSUPER 16.9 +115.0 114981 10 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 LINC01135 JUN LOC105378753 FGGY PIR58695
GH01H058880 2 FANTOM5 Ensembl ENCODE dbSUPER 15.8 +99.3 99287 7 PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 LINC01135 FGGY MYSM1 JUN LOC105378753 PIR58695 GC01M058846
GH01H058925 1.8 FANTOM5 Ensembl ENCODE dbSUPER 16.3 +144.8 144783 8 PKNOX1 ARNT TCF12 FOS DEK SMARCB1 SREBF1 MAFF SMARCA4 GLIS1 LINC01135 JUN FGGY LOC105378753 TACSTD2 LINC01358
GH01H058812 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11.6 +31.2 31158 7 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF766 ZNF143 ZNF207 FOS DEK JUN LINC01135 FGGY MYSM1 PIR37218 ENSG00000231740
GH01H058779 1.4 ENCODE dbSUPER 15.9 -2.0 -1990 8 FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC MEF2D ZNF610 GLIS1 RCOR2 MYSM1 LINC01135 DAB1-AS1 ENSG00000272226 FGGY JUN LOC105378751
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01135 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01135 Gene

Chromosome:
1
Start:
58,785,151 bp from pter
End:
58,899,712 bp from pter
Size:
114,562 bases
Orientation:
Plus strand

Genomic View for LINC01135 Gene

Genes around LINC01135 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01135 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01135 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01135 Gene

Proteins for LINC01135 Gene

Post-translational modifications for LINC01135 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01135 Gene

Domains & Families for LINC01135 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01135 Gene

Function for LINC01135 Gene

Phenotypes From GWAS Catalog for LINC01135 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01135 Gene

Localization for LINC01135 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01135 Gene

Pathways & Interactions for LINC01135 Gene

SuperPathways for LINC01135 Gene

No Data Available

Interacting Proteins for LINC01135 Gene

Gene Ontology (GO) - Biological Process for LINC01135 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01135 Gene

Drugs & Compounds for LINC01135 Gene

No Compound Related Data Available

Transcripts for LINC01135 Gene

mRNA/cDNA for LINC01135 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01135 Gene

No ASD Table

Relevant External Links for LINC01135 Gene

GeneLoc Exon Structure for
LINC01135
ECgene alternative splicing isoforms for
LINC01135

Expression for LINC01135 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01135 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01135 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC01135 Gene:

LINC01135
genes like me logo Genes that share expression patterns with LINC01135: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01135 Gene

Orthologs for LINC01135 Gene

Evolution for LINC01135 Gene

ENSEMBL:
Gene Tree for LINC01135 (if available)
TreeFam:
Gene Tree for LINC01135 (if available)

No data available for Orthologs for LINC01135 Gene

Paralogs for LINC01135 Gene

No data available for Paralogs for LINC01135 Gene

Variants for LINC01135 Gene

Sequence variations from dbSNP and Humsavar for LINC01135 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000010491 -- 58,873,748(+) TCTAT(A/G)TAAAC intron-variant
rs1000100156 -- 58,835,304(+) AATGT(C/T)GCCGG intron-variant
rs1000107153 -- 58,790,969(+) TAAAG(C/G)AATTC intron-variant
rs1000131097 -- 58,821,992(+) CCTCG(C/T)CCAAG intron-variant
rs1000134509 -- 58,784,735(+) GCGGT(C/T)TCCCG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LINC01135 Gene

Variant ID Type Subtype PubMed ID
esv3420573 CNV insertion 20981092
nsv1005354 CNV gain 25217958
nsv1014087 CNV gain 25217958
nsv829959 CNV gain 17160897

Relevant External Links for LINC01135 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01135

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01135 Gene

Disorders for LINC01135 Gene

Relevant External Links for LINC01135

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01135

No disorders were found for LINC01135 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01135 Gene

Publications for LINC01135 Gene

  1. A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB. (PMID: 19734545) Need AC … Goldstein DB (Human molecular genetics 2009) 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for LINC01135 Gene

Sources for LINC01135 Gene

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