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Aliases for LINC01121 Gene

Subcategory (RNA class) for LINC01121 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01121 Gene

  • Long Intergenic Non-Protein Coding RNA 1121 2 3 5
  • NGNL6975 3
  • UNQ6975 3

External Ids for LINC01121 Gene

Previous GeneCards Identifiers for LINC01121 Gene

  • GC02M045397

Summaries for LINC01121 Gene

GeneCards Summary for LINC01121 Gene

LINC01121 (Long Intergenic Non-Protein Coding RNA 1121) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01121 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01121 Gene

Genomics for LINC01121 Gene

GeneHancer (GH) Regulatory Elements for LINC01121 Gene

Promoters and enhancers for LINC01121 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I045273 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.2 +48.0 48031 3.8 FOXA2 MLX ZFP64 ARID4B ZNF48 YY1 ATF7 FOS RXRA SP5 GC02P045291 LINC01121 LOC105374576
GH02I045315 Enhancer 0.6 ENCODE 0.4 +6.7 6733 2.4 ATF2 ZNF316 GATA3 JUND ATF4 POLR2A ATF7 MAFK LINC01121 GC02P045291
GH02I045236 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.2 +85.4 85376 3.5 FOXA2 ARID4B SIN3A RAD21 RFX5 ZNF335 SCRT2 RCOR1 FOS KLF11 LOC105374576 GC02P045291 LINC01121
GH02I045240 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.2 +81.6 81646 3.1 PKNOX1 BMI1 ZNF2 ZEB1 ZNF335 ZNF366 SCRT2 RCOR1 ATF7 ZNF391 SIX2 LOC105374576 GC02P045291 LINC01121
GH02I045255 Enhancer 1.1 ENCODE dbSUPER 0.2 +65.9 65880 3.9 PKNOX1 FOXA2 ARNT ARID4B FEZF1 ZNF48 YY1 RXRA SP5 MXD4 GC02P045291 LOC105374576 LINC01121
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01121 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01121 Gene

Genomic Locations for LINC01121 Gene
chr2:45,164,870-45,323,295
(GRCh38/hg38)
Size:
158,426 bases
Orientation:
Minus strand
chr2:45,392,009-45,550,434
(GRCh37/hg19)

Genomic View for LINC01121 Gene

Genes around LINC01121 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01121 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01121 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01121 Gene

Proteins for LINC01121 Gene

Post-translational modifications for LINC01121 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01121 Gene

Domains & Families for LINC01121 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01121 Gene

Function for LINC01121 Gene

Phenotypes From GWAS Catalog for LINC01121 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01121 Gene

Localization for LINC01121 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01121 Gene

Pathways & Interactions for LINC01121 Gene

SuperPathways for LINC01121 Gene

No Data Available

Interacting Proteins for LINC01121 Gene

Gene Ontology (GO) - Biological Process for LINC01121 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01121 Gene

Drugs & Compounds for LINC01121 Gene

No Compound Related Data Available

Transcripts for LINC01121 Gene

mRNA/cDNA for LINC01121 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01121 Gene

No ASD Table

Relevant External Links for LINC01121 Gene

GeneLoc Exon Structure for
LINC01121
ECgene alternative splicing isoforms for
LINC01121

Expression for LINC01121 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01121 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01121 Gene

This gene is overexpressed in Testis (x10.3) and Vagina (x5.4).

NURSA nuclear receptor signaling pathways regulating expression of LINC01121 Gene:

LINC01121
genes like me logo Genes that share expression patterns with LINC01121: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01121 Gene

Orthologs for LINC01121 Gene

Evolution for LINC01121 Gene

ENSEMBL:
Gene Tree for LINC01121 (if available)
TreeFam:
Gene Tree for LINC01121 (if available)

No data available for Orthologs for LINC01121 Gene

Paralogs for LINC01121 Gene

No data available for Paralogs for LINC01121 Gene

Variants for LINC01121 Gene

Sequence variations from dbSNP and Humsavar for LINC01121 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000107053 -- 45,222,922(-) G/A intron_variant
rs1000118996 -- 45,210,810(-) C/T intron_variant
rs1000175227 -- 45,183,624(-) G/A intron_variant
rs1000177349 -- 45,251,777(-) A/G intron_variant
rs1000185244 -- 45,177,850(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01121 Gene

Variant ID Type Subtype PubMed ID
dgv1119e212 CNV gain 25503493
dgv3804n100 CNV gain 25217958
dgv456n27 CNV loss 19166990
dgv6841n54 CNV loss 21841781
esv2424728 CNV deletion 19546169
esv2751894 CNV gain 17911159
esv29116 CNV loss 19812545
esv3583775 CNV loss 25503493
nsv1078922 CNV insertion 25765185
nsv2712 CNV insertion 18451855
nsv526205 CNV loss 19592680
nsv581709 CNV gain 21841781
nsv998646 CNV loss 25217958

Additional Variant Information for LINC01121 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01121

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01121 Gene

Disorders for LINC01121 Gene

Additional Disease Information for LINC01121

No disorders were found for LINC01121 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01121 Gene

Publications for LINC01121 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 58

Products for LINC01121 Gene

Sources for LINC01121 Gene

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