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Aliases for LINC01116 Gene

Subcategory (RNA class) for LINC01116 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01116 Gene

  • Long Intergenic Non-Protein Coding RNA 1116 2 3 5
  • Tumor Associated LncRNA Expressed In Chromosome 2 2 3
  • TALNEC2 3

External Ids for LINC01116 Gene

Previous GeneCards Identifiers for LINC01116 Gene

  • GC02M177501

Summaries for LINC01116 Gene

GeneCards Summary for LINC01116 Gene

LINC01116 (Long Intergenic Non-Protein Coding RNA 1116) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01116 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01116 Gene

Genomics for LINC01116 Gene

Regulatory Elements for LINC01116 Gene

Enhancers for LINC01116 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H176653 0.9 FANTOM5 ENCODE 7.6 -16.2 -16169 0.2 CTCF ZNF654 TEAD1 TRIM22 RAD21 GATA3 FOXK2 ZNF341 SMC3 ZNF143 HOXD3 HOXD8 HOXD-AS2 HOXD9 HOXD11 LINC01116 GC02P176666 GC02P176638
GH02H176666 0.3 FANTOM5 4.7 -28.4 -28374 0.2 LINC01116 RNU6ATAC14P LOC105369143
GH02H176637 0.9 ENCODE 0.7 +0.2 218 1.4 RB1 ZSCAN4 SIN3A RAD21 ZNF366 KLF7 EGR2 SMARCA5 ZNF654 ZNF362 LINC01117 LINC01116
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01116 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01116 Gene

Genomic Locations for LINC01116 Gene
chr2:176,629,581-176,637,931
(GRCh38/hg38)
Size:
8,351 bases
Orientation:
Minus strand
chr2:177,494,309-177,502,659
(GRCh37/hg19)

Genomic View for LINC01116 Gene

Genes around LINC01116 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01116 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01116 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01116 Gene

Proteins for LINC01116 Gene

Post-translational modifications for LINC01116 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01116 Gene

Domains & Families for LINC01116 Gene

Gene Families for LINC01116 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01116: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01116 Gene

Function for LINC01116 Gene

Phenotypes for LINC01116 Gene

genes like me logo Genes that share phenotypes with LINC01116: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01116 Gene

Localization for LINC01116 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01116 Gene

Pathways & Interactions for LINC01116 Gene

SuperPathways for LINC01116 Gene

No Data Available

Interacting Proteins for LINC01116 Gene

Gene Ontology (GO) - Biological Process for LINC01116 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01116 Gene

Drugs & Compounds for LINC01116 Gene

No Compound Related Data Available

Transcripts for LINC01116 Gene

mRNA/cDNA for LINC01116 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01116 Gene

No ASD Table

Relevant External Links for LINC01116 Gene

GeneLoc Exon Structure for
LINC01116
ECgene alternative splicing isoforms for
LINC01116

Expression for LINC01116 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01116 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01116 Gene

This gene is overexpressed in Kidney - Cortex (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of LINC01116 Gene:

LINC01116
genes like me logo Genes that share expression patterns with LINC01116: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01116 Gene

Orthologs for LINC01116 Gene

Evolution for LINC01116 Gene

ENSEMBL:
Gene Tree for LINC01116 (if available)
TreeFam:
Gene Tree for LINC01116 (if available)

No data available for Orthologs for LINC01116 Gene

Paralogs for LINC01116 Gene

No data available for Paralogs for LINC01116 Gene

Variants for LINC01116 Gene

Sequence variations from dbSNP and Humsavar for LINC01116 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000407368 -- 176,631,074(+) GCTTT(G/T)TGGGG intron-variant
rs1000459505 -- 176,630,776(+) TTAAT(A/G)TTGCA intron-variant
rs1000615089 -- 176,638,301(+) CTTGC(A/C/G)GGGAT intron-variant, upstream-variant-2KB
rs1000842137 -- 176,629,789(+) AGATC(-/AAG)AAGCT nc-transcript-variant
rs1001070258 -- 176,637,828(+) GGATG(C/T)GCTGA nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LINC01116 Gene

Variant ID Type Subtype PubMed ID
nsv834464 CNV gain 17160897

Relevant External Links for LINC01116 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01116

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01116 Gene

Disorders for LINC01116 Gene

Relevant External Links for LINC01116

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01116

No disorders were found for LINC01116 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01116 Gene

Publications for LINC01116 Gene

  1. The novel long non-coding RNA TALNEC2, regulates tumor cell growth and the stemness and radiation response of glioma stem cells. (PMID: 28423669) Brodie S … Brodie C (Oncotarget 2017) 2 3 60
  2. Long noncoding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer. (PMID: 28131897) Beaver LM … Ho E (The Journal of nutritional biochemistry 2017) 2 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LINC01116 Gene

Sources for LINC01116 Gene

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