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Aliases for LINC01089 Gene

Subcategory (RNA class) for LINC01089 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01089 Gene

  • Long Intergenic Non-Protein Coding RNA 1089 2 3 5
  • Long Non Coding RNA Inhibiting Metastasis 2 3
  • LIMT 3

External Ids for LINC01089 Gene

Previous GeneCards Identifiers for LINC01089 Gene

  • GC12M122236

Summaries for LINC01089 Gene

GeneCards Summary for LINC01089 Gene

LINC01089 (Long Intergenic Non-Protein Coding RNA 1089) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01089 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01089 Gene

Genomics for LINC01089 Gene

Regulatory Elements for LINC01089 Gene

Enhancers for LINC01089 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H121783 1.9 FANTOM5 ENCODE dbSUPER 32.4 +7.9 7914 24 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 ZC3H11A NFYC MEF2D ZCCHC8 RSRC2 ENSG00000272849 PSMD9 SETD1B ANAPC5 KNTC1 LINC01089 HPD KDM2B
GH12H122020 1.7 FANTOM5 ENCODE dbSUPER 31.8 -219.2 -219150 4 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 MCM3 RSRC2 LINC01089 WDR66 SETD1B ZCCHC8 KNTC1 PSMD9 VPS33A ENSG00000272849 DIABLO
GH12H121810 1.5 Ensembl ENCODE dbSUPER 20.1 -8.5 -8477 3 HDGF PKNOX1 ATF1 ZFP64 SIN3A ZNF2 GLIS2 ZNF143 ATF7 RUNX3 ENSG00000272849 LINC01089 ENSG00000256811
GH12H121887 1.2 ENCODE 21.6 -85.2 -85186 2 MLX FEZF1 DMAP1 YY1 ZNF143 SP3 MEF2D ZNF610 GLIS1 RCOR2 RSRC2 KNTC1 ZCCHC8 SETD1B ENSG00000272849 ANAPC5 PSMD9 LINC01089 SPPL3 IL31
GH12H121657 1.6 Ensembl ENCODE dbSUPER 15.7 +144.6 144593 2 HDGF PKNOX1 ARNT ZNF766 MCM3 ZNF592 MEF2D SMARCA4 GLIS1 NBN KNTC1 RSRC2 ZCCHC8 PSMD9 SETD1B LINC01089 ENSG00000272849 LOC101928346 KDM2B ORAI1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01089 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01089 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000270548 1206 6201 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9

Genomic Location for LINC01089 Gene

Chromosome:
12
Start:
121,795,267 bp from pter
End:
121,803,906 bp from pter
Size:
8,640 bases
Orientation:
Minus strand

Genomic View for LINC01089 Gene

Genes around LINC01089 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01089 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01089 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01089 Gene

Proteins for LINC01089 Gene

Post-translational modifications for LINC01089 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01089 Gene

Domains & Families for LINC01089 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01089 Gene

Function for LINC01089 Gene

Phenotypes From GWAS Catalog for LINC01089 Gene

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01089 Gene

Localization for LINC01089 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01089 Gene

Pathways & Interactions for LINC01089 Gene

SuperPathways for LINC01089 Gene

No Data Available

Interacting Proteins for LINC01089 Gene

Gene Ontology (GO) - Biological Process for LINC01089 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01089 Gene

Drugs & Compounds for LINC01089 Gene

No Compound Related Data Available

Transcripts for LINC01089 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01089 Gene

No ASD Table

Relevant External Links for LINC01089 Gene

GeneLoc Exon Structure for
LINC01089
ECgene alternative splicing isoforms for
LINC01089

Expression for LINC01089 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01089 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01089 Gene:

LINC01089
genes like me logo Genes that share expression patterns with LINC01089: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01089 Gene

Orthologs for LINC01089 Gene

Evolution for LINC01089 Gene

ENSEMBL:
Gene Tree for LINC01089 (if available)
TreeFam:
Gene Tree for LINC01089 (if available)

No data available for Orthologs for LINC01089 Gene

Paralogs for LINC01089 Gene

No data available for Paralogs for LINC01089 Gene

Variants for LINC01089 Gene

Sequence variations from dbSNP and Humsavar for LINC01089 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000022042 -- 121,803,127(+) CTGCG(C/T)CTCGG nc-transcript-variant, upstream-variant-2KB
rs1000033021 -- 121,797,487(+) AGAAA(A/G)AAGAG intron-variant
rs1000136481 -- 121,802,911(+) ATGGC(C/T)TCCCT nc-transcript-variant, upstream-variant-2KB
rs1000148507 -- 121,795,445(+) AGGGT(A/G)GGTAA nc-transcript-variant, upstream-variant-2KB
rs1001015616 -- 121,800,981(+) CAGCC(C/T)GGCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01089 Gene

Variant ID Type Subtype PubMed ID
esv33181 CNV loss 17666407
esv3892268 CNV loss 25118596
nsv1126324 CNV deletion 24896259
nsv1160065 CNV deletion 26073780
nsv911 CNV deletion 18451855

Relevant External Links for LINC01089 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01089

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01089 Gene

Disorders for LINC01089 Gene

Relevant External Links for LINC01089

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01089

No disorders were found for LINC01089 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01089 Gene

Publications for LINC01089 Gene

  1. LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer. (PMID: 27485121) Sas-Chen A … Yarden Y (EMBO molecular medicine 2016) 2 3 60
  2. The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma. (PMID: 26252651) Zhi F … Yang Y (PloS one 2015) 2 3 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LINC01089 Gene

Sources for LINC01089 Gene

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