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Aliases for LINC01081 Gene

Subcategory (RNA class) for LINC01081 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01081 Gene

  • Long Intergenic Non-Protein Coding RNA 1081 2 3
  • Long Non-Coding RNA TCONS_00024764 3
  • TCONS_00024764 3
  • TCONS00024764 3
  • RP11-514D23.2 5

External Ids for LINC01081 Gene

Previous GeneCards Identifiers for LINC01081 Gene

  • GC16U901580

Summaries for LINC01081 Gene

GeneCards Summary for LINC01081 Gene

LINC01081 (Long Intergenic Non-Protein Coding RNA 1081) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01081 include alveolar capillary dysplasia with misalignment of pulmonary veins and alveolar capillary dysplasia.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01081 Gene

Genomics for LINC01081 Gene

Genomic Location for LINC01081 Gene

Chromosome:
16
Start:
86,225,580 bp from pter
End:
86,286,247 bp from pter
Size:
60,668 bases
Orientation:
Minus strand

Genomic View for LINC01081 Gene

Genes around LINC01081 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01081 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01081 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01081 Gene

No data available for Regulatory Elements for LINC01081 Gene

Proteins for LINC01081 Gene

Post-translational modifications for LINC01081 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01081 Gene

Domains & Families for LINC01081 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01081 Gene

Function for LINC01081 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01081 Gene

Localization for LINC01081 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01081 Gene

Pathways & Interactions for LINC01081 Gene

SuperPathways for LINC01081 Gene

No Data Available

Interacting Proteins for LINC01081 Gene

Gene Ontology (GO) - Biological Process for LINC01081 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01081 Gene

Drugs & Compounds for LINC01081 Gene

No Compound Related Data Available

Transcripts for LINC01081 Gene

mRNA/cDNA for LINC01081 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01081 Gene

No ASD Table

Relevant External Links for LINC01081 Gene

GeneLoc Exon Structure for
LINC01081
ECgene alternative splicing isoforms for
LINC01081

Expression for LINC01081 Gene

mRNA expression in normal human tissues for LINC01081 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01081 Gene

This gene is overexpressed in Testis (x22.0) and Bladder (x4.8).
genes like me logo Genes that share expression patterns with LINC01081: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LINC01081 Gene

Orthologs for LINC01081 Gene

Evolution for LINC01081 Gene

ENSEMBL:
Gene Tree for LINC01081 (if available)
TreeFam:
Gene Tree for LINC01081 (if available)

No data available for Orthologs for LINC01081 Gene

Paralogs for LINC01081 Gene

No data available for Paralogs for LINC01081 Gene

Variants for LINC01081 Gene

Sequence variations from dbSNP and Humsavar for LINC01081 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs717482 -- 86,271,391(+) AAGAC(C/T)CTTTA intron-variant
rs904193 -- 86,226,167(+) TGATT(C/G)CTTGG intron-variant
rs904194 -- 86,252,473(+) ATTCA(A/G)TATTG intron-variant
rs907050 -- 86,281,386(+) TTATA(A/G)ATCAG intron-variant
rs907051 -- 86,232,932(-) TGCAG(A/C)ATAAG intron-variant

Relevant External Links for LINC01081 Gene

HapMap Linkage Disequilibrium report
LINC01081

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01081 Gene

Disorders for LINC01081 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC01081 Gene - From: GeneCards

Disorder Aliases PubMed IDs
alveolar capillary dysplasia with misalignment of pulmonary veins
  • persistent fetal circulation syndrome
alveolar capillary dysplasia
  • alveolar capillary dysplasia with misalignment of pulmonary veins
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for LINC01081

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01081
genes like me logo Genes that share disorders with LINC01081: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01081 Gene

Publications for LINC01081 Gene

  1. Two deletions overlapping a distant FOXF1 enhancer unravel the role of lncRNA LINC01081 in etiology of alveolar capillary dysplasia with misalignment of pulmonary veins. (PMID: 24842713) Szafranski P. … Stankiewicz P. (Am. J. Med. Genet. A 2014) 2 3 67
  2. Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations. (PMID: 21844884) Wheeler H.E. … Dolan M.E. (Pharmacogenomics J. 2013) 3

Products for LINC01081 Gene

Sources for LINC01081 Gene

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