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Aliases for LINC01081 Gene

Subcategory (RNA class) for LINC01081 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01081 Gene

  • Long Intergenic Non-Protein Coding RNA 1081 2 3 5
  • Long Non-Coding RNA TCONS_00024764 3
  • TCONS_00024764 3
  • TCONS00024764 3

External Ids for LINC01081 Gene

Previous GeneCards Identifiers for LINC01081 Gene

  • GC16U901580

Summaries for LINC01081 Gene

GeneCards Summary for LINC01081 Gene

LINC01081 (Long Intergenic Non-Protein Coding RNA 1081) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01081 include Alveolar Capillary Dysplasia With Misalignment Of Pulmonary Veins and Alveolar Capillary Dysplasia.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01081 Gene

Genomics for LINC01081 Gene

Regulatory Elements for LINC01081 Gene

Enhancers for LINC01081 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G086277 0.6 ENCODE 0.4 +8.8 8789 0.5 TEAD4 MAX YBX1 FOXK2 ZNF366 POU5F1 NBN FOXP1 ENSG00000199949 GC16M086275 LINC01081
GH16G086281 0.2 dbSUPER 0.7 +4.3 4348 1.4 LINC01081 GC16M086275 ENSG00000199949
GH16G086278 0.3 FANTOM5 0.4 +7.3 7323 0.4 GC16M086275 ENSG00000199949 LINC01081
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01081 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01081 Gene

Chromosome:
16
Start:
86,225,580 bp from pter
End:
86,286,247 bp from pter
Size:
60,668 bases
Orientation:
Minus strand

Genomic View for LINC01081 Gene

Genes around LINC01081 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01081 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01081 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01081 Gene

Proteins for LINC01081 Gene

Post-translational modifications for LINC01081 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01081 Gene

Domains & Families for LINC01081 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01081 Gene

Function for LINC01081 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01081 Gene

Localization for LINC01081 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01081 Gene

Pathways & Interactions for LINC01081 Gene

SuperPathways for LINC01081 Gene

No Data Available

Interacting Proteins for LINC01081 Gene

Gene Ontology (GO) - Biological Process for LINC01081 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01081 Gene

Transcripts for LINC01081 Gene

mRNA/cDNA for LINC01081 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01081 Gene

No ASD Table

Relevant External Links for LINC01081 Gene

GeneLoc Exon Structure for
LINC01081
ECgene alternative splicing isoforms for
LINC01081

Expression for LINC01081 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01081 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01081 Gene

This gene is overexpressed in Testis (x22.0) and Bladder (x4.8).

NURSA nuclear receptor signaling pathways regulating expression of LINC01081 Gene:

LINC01081
genes like me logo Genes that share expression patterns with LINC01081: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01081 Gene

Orthologs for LINC01081 Gene

Evolution for LINC01081 Gene

ENSEMBL:
Gene Tree for LINC01081 (if available)
TreeFam:
Gene Tree for LINC01081 (if available)

No data available for Orthologs for LINC01081 Gene

Paralogs for LINC01081 Gene

No data available for Paralogs for LINC01081 Gene

Variants for LINC01081 Gene

Sequence variations from dbSNP and Humsavar for LINC01081 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000016471 -- 86,227,660(+) AGACC(C/T)TCCCT intron-variant
rs1000058881 -- 86,235,327(+) AATGG(A/G)CTAAA intron-variant
rs1000075924 -- 86,256,451(+) GCTTC(A/C)AAATT intron-variant
rs1000130667 -- 86,236,599(+) AAACC(A/T)GGAAG intron-variant
rs1000148336 -- 86,286,840(+) GGGGC(C/T)TGAGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LINC01081 Gene

Variant ID Type Subtype PubMed ID
dgv5280n54 CNV loss 21841781
esv1161820 CNV insertion 17803354
esv1953410 CNV deletion 18987734
esv2575962 CNV deletion 19546169
esv2639383 CNV deletion 19546169
esv2714872 CNV deletion 23290073
esv2758665 CNV loss 17122850
esv2761931 CNV gain 21179565
esv2763147 CNV loss 21179565
esv3183790 CNV deletion 24192839
esv3306968 CNV mobile element insertion 20981092
esv3392608 CNV insertion 20981092
esv3553825 CNV deletion 23714750
esv3582422 CNV loss 25503493
esv3582423 CNV loss 25503493
esv3892931 CNV loss 25118596
esv3909 CNV loss 18987735
esv4262 OTHER complex 18987735
esv6907 CNV loss 19470904
nsv1065605 CNV gain 25217958
nsv1066745 CNV gain+loss 25217958
nsv1071344 CNV deletion 25765185
nsv1113828 CNV deletion 24896259
nsv1141294 CNV duplication 24896259
nsv483044 CNV gain 15286789
nsv524026 CNV loss 19592680
nsv573526 CNV loss 21841781
nsv833317 CNV gain 17160897
nsv958845 CNV deletion 24416366

Relevant External Links for LINC01081 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01081

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01081 Gene

Disorders for LINC01081 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC01081 Gene - From: GeneCards

Disorder Aliases PubMed IDs
alveolar capillary dysplasia with misalignment of pulmonary veins
  • acd
alveolar capillary dysplasia
  • alveolar capillary dysplasia with misalignment of pulmonary veins
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for LINC01081

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01081
genes like me logo Genes that share disorders with LINC01081: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01081 Gene

Publications for LINC01081 Gene

  1. Two deletions overlapping a distant FOXF1 enhancer unravel the role of lncRNA LINC01081 in etiology of alveolar capillary dysplasia with misalignment of pulmonary veins. (PMID: 24842713) Szafranski P. … Stankiewicz P. (Am. J. Med. Genet. A 2014) 2 3 64
  2. Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations. (PMID: 21844884) Wheeler H.E. … Dolan M.E. (Pharmacogenomics J. 2013) 3 64

Products for LINC01081 Gene

Sources for LINC01081 Gene

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