Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01023 Gene

Subcategory (RNA class) for LINC01023 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01023 Gene

  • Long Intergenic Non-Protein Coding RNA 1023 2 3 5
  • CTC-329H14.4 3
  • HP07349 3

External Ids for LINC01023 Gene

Previous GeneCards Identifiers for LINC01023 Gene

  • GC05M108065

Summaries for LINC01023 Gene

GeneCards Summary for LINC01023 Gene

LINC01023 (Long Intergenic Non-Protein Coding RNA 1023) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01023 Gene

Genomics for LINC01023 Gene

Regulatory Elements for LINC01023 Gene

Enhancers for LINC01023 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F108746 0.4 ENCODE 14.5 -20.5 -20471 3.7 HDGF PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 ENSG00000251367 ENSG00000248440 ENSG00000248876 KRT18P42 LINC01023 LOC285638 FER LOC100422561
GH05F109406 1 FANTOM5 ENCODE 12.3 -681.4 -681427 5.6 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 LOC285638 PJA2 LINC01023 MAN2A1 GC05P109401
GH05F109468 0.5 Ensembl ENCODE 12.3 -740.6 -740555 0.4 ATF1 PKNOX1 ZNF133 ARID4B FEZF1 ZNF2 ZNF143 KLF7 MXD4 TSHZ1 LINC01023 ENSG00000251367 LOC105379117
GH05F108726 0.6 ENCODE 12 +0.4 357 2.9 HDGF ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 CBX5 FER KRT18P42 ENSG00000251367 ENSG00000248876 ENSG00000248440 LINC01023 GC05M108715
GH05F108742 0.5 ENCODE 4.8 -15.5 -15468 1.8 CTCF ZNF512 CEBPB HMBOX1 RAD21 FER LINC01023 GC05P108729
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LINC01023 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01023 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001287087 161 2201 HDGF ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 CBX5

Genomic Location for LINC01023 Gene

Chromosome:
5
Start:
108,727,825 bp from pter
End:
108,728,261 bp from pter
Size:
437 bases
Orientation:
Minus strand

Genomic View for LINC01023 Gene

Genes around LINC01023 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01023 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01023 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01023 Gene

Proteins for LINC01023 Gene

Post-translational modifications for LINC01023 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01023 Gene

Domains & Families for LINC01023 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01023 Gene

Function for LINC01023 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01023 Gene

Localization for LINC01023 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01023 Gene

Pathways & Interactions for LINC01023 Gene

SuperPathways for LINC01023 Gene

No Data Available

Interacting Proteins for LINC01023 Gene

Gene Ontology (GO) - Biological Process for LINC01023 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01023 Gene

Transcripts for LINC01023 Gene

mRNA/cDNA for LINC01023 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01023 Gene

No ASD Table

Relevant External Links for LINC01023 Gene

GeneLoc Exon Structure for
LINC01023
ECgene alternative splicing isoforms for
LINC01023

Expression for LINC01023 Gene

mRNA expression in normal human tissues for LINC01023 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01023 Gene:

LINC01023
genes like me logo Genes that share expression patterns with LINC01023: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01023 Gene

Orthologs for LINC01023 Gene

Evolution for LINC01023 Gene

ENSEMBL:
Gene Tree for LINC01023 (if available)
TreeFam:
Gene Tree for LINC01023 (if available)

No data available for Orthologs for LINC01023 Gene

Paralogs for LINC01023 Gene

No data available for Paralogs for LINC01023 Gene

Variants for LINC01023 Gene

Sequence variations from dbSNP and Humsavar for LINC01023 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10066173 -- 108,728,218(+) AAGAG(A/G)CCGCG nc-transcript-variant
rs1109617 -- 108,729,493(+) GATTT(C/G)GCAAT upstream-variant-2KB
rs111699004 -- 108,728,859(+) AAAAA(-/G)AGAGA upstream-variant-2KB
rs112572967 -- 108,728,756(+) AGAGA(C/T)CTAAA upstream-variant-2KB
rs112927680 -- 108,729,161(+) GGTGA(A/G)GCATG upstream-variant-2KB

Relevant External Links for LINC01023 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01023

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01023 Gene

Disorders for LINC01023 Gene

Relevant External Links for LINC01023

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01023

No disorders were found for LINC01023 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01023 Gene

Publications for LINC01023 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M. … Kato S. (Invest. Ophthalmol. Vis. Sci. 2011) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC01023 Gene

Sources for LINC01023 Gene

Content
Loading form....