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Aliases for LINC00987 Gene

Subcategory (RNA class) for LINC00987 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00987 Gene

  • Long Intergenic Non-Protein Coding RNA 987 2 3 5

External Ids for LINC00987 Gene

Previous GeneCards Identifiers for LINC00987 Gene

  • GC12P009394

Summaries for LINC00987 Gene

GeneCards Summary for LINC00987 Gene

LINC00987 (Long Intergenic Non-Protein Coding RNA 987) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00987 Gene

Genomics for LINC00987 Gene

Regulatory Elements for LINC00987 Gene

Enhancers for LINC00987 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G009023 0.6 ENCODE dbSUPER 11 -214.1 -214067 4.8 ZNF146 M6PR KLRG1 PHC1 LINC00987 A2M HNRNPA1P34 ENSG00000257105
GH12G008821 0.8 Ensembl ENCODE 5.4 -417.1 -417114 2.6 CTCF ZNF654 ZBTB48 ZNF341 SMC3 REST RAD21 RIMKLB LINC00987 A2ML1 A2ML1-AS1
GH12G009030 0.2 dbSUPER 9.1 -209.0 -208980 1.0 KLRG1 PHC1 LINC00987 LOC642846 HNRNPA1P34 VDAC2P2
GH12G009240 0.6 ENCODE 0.7 +0.4 385 0.8 MAFG RAD21 YY1 ZNF316 NFE2L1 NFE2 EMSY MAFK NFE2L2 DDX12P PZP LOC642846 PTMAP4 LINC00987
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00987 on UCSC Golden Path with GeneCards custom track

Promoters for LINC00987 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000048594 397 801 MAFG RAD21 YY1 ZNF316 NFE2L1 NFE2 EMSY MAFK NFE2L2

Genomic Location for LINC00987 Gene

Chromosome:
12
Start:
9,240,003 bp from pter
End:
9,243,052 bp from pter
Size:
3,050 bases
Orientation:
Plus strand

Genomic View for LINC00987 Gene

Genes around LINC00987 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00987 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00987 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00987 Gene

Proteins for LINC00987 Gene

Post-translational modifications for LINC00987 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00987 Gene

Domains & Families for LINC00987 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00987 Gene

Function for LINC00987 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00987 Gene

Localization for LINC00987 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00987 Gene

Pathways & Interactions for LINC00987 Gene

SuperPathways for LINC00987 Gene

No Data Available

Interacting Proteins for LINC00987 Gene

Gene Ontology (GO) - Biological Process for LINC00987 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00987 Gene

Drugs & Compounds for LINC00987 Gene

No Compound Related Data Available

Transcripts for LINC00987 Gene

mRNA/cDNA for LINC00987 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00987 Gene

No ASD Table

Relevant External Links for LINC00987 Gene

GeneLoc Exon Structure for
LINC00987
ECgene alternative splicing isoforms for
LINC00987

Expression for LINC00987 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00987 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00987 Gene:

LINC00987
genes like me logo Genes that share expression patterns with LINC00987: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00987 Gene

Orthologs for LINC00987 Gene

Evolution for LINC00987 Gene

ENSEMBL:
Gene Tree for LINC00987 (if available)
TreeFam:
Gene Tree for LINC00987 (if available)

No data available for Orthologs for LINC00987 Gene

Paralogs for LINC00987 Gene

No data available for Paralogs for LINC00987 Gene

Variants for LINC00987 Gene

Sequence variations from dbSNP and Humsavar for LINC00987 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000106854 -- 9,255,892(+) ATATA(C/G)ATCTC downstream-variant-500B
rs1000159402 -- 9,255,528(+) GCCAA(G/T)TCTGT intron-variant
rs1000398066 -- 9,250,639(+) CATAC(A/G)CCCTC intron-variant
rs1000450388 -- 9,250,270(+) TTTGA(A/C/G)ACTAA intron-variant
rs1000464942 -- 9,250,196(+) CATGC(A/C)AATGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00987 Gene

Variant ID Type Subtype PubMed ID
esv2759878 CNV gain+loss 17122850
nsv1048917 CNV loss 25217958
nsv1051530 CNV gain 25217958
nsv1126310 CNV deletion 24896259
nsv523958 CNV loss 19592680
nsv527404 CNV gain 19592680
nsv557355 CNV gain 21841781
nsv973021 CNV duplication 23825009

Relevant External Links for LINC00987 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00987

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00987 Gene

Disorders for LINC00987 Gene

Relevant External Links for LINC00987

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00987

No disorders were found for LINC00987 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00987 Gene

Publications for LINC00987 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for LINC00987 Gene

Sources for LINC00987 Gene

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