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Aliases for LINC00964 Gene

Subcategory (RNA class) for LINC00964 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC00964 Gene

  • Long Intergenic Non-Protein Coding RNA 964 2 3 5

External Ids for LINC00964 Gene

Previous GeneCards Identifiers for LINC00964 Gene

  • GC08P125863

Summaries for LINC00964 Gene

GeneCards Summary for LINC00964 Gene

LINC00964 (Long Intergenic Non-Protein Coding RNA 964) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00964 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00964 Gene

Genomics for LINC00964 Gene

Regulatory Elements for LINC00964 Gene

Enhancers for LINC00964 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H124955 1 ENCODE 38.7 +107.7 107654 1 HDGF PKNOX1 ATF1 YY1 TCF12 CBX5 ELK1 FOS ATF7 NCOA1 LINC00964 SQLE LOC105375744 PIR52062 GC08P124985 PIR57426
GH08H125216 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12 +370.8 370809 5.1 HDGF PKNOX1 FOXA2 ARID4B SIN3A YY1 ATF7 FOS RUNX3 DEK TRIB1 LINC00964 ENSG00000253106 NSMCE2 WASHC5 MTSS1 RN7SL329P
GH08H125232 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.6 +383.8 383828 1.5 FOXA2 ARID4B SIN3A BRCA1 ATF7 FOS KAT8 SREBF1 NFIL3 MIER3 TRIB1 LINC00964 WASHC5 NSMCE2 RN7SL329P
GH08H125172 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +326.4 326403 4.3 PKNOX1 TBL1XR1 SIN3A BMI1 BATF YY1 SCRT2 FOS ATF7 ETV6 WASHC5 ENSG00000253106 TRIB1 NSMCE2 TRMT12 WASHC5-AS1 LINC00964 RNF139-AS1 RN7SL329P
GH08H125223 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +376.9 376914 3.9 HDGF TBL1XR1 RB1 RAD21 ATF7 RUNX3 IKZF2 ELF1 ZNF217 CEBPA LINC00964 TRIB1 NSMCE2 RN7SL329P WASHC5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00964 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00964 Gene

Genomic Locations for LINC00964 Gene
105,592 bases
Plus strand

Genomic View for LINC00964 Gene

Genes around LINC00964 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00964 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00964 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00964 Gene

Proteins for LINC00964 Gene

Post-translational modifications for LINC00964 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00964 Gene

Domains & Families for LINC00964 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00964 Gene

Function for LINC00964 Gene

Phenotypes From GWAS Catalog for LINC00964 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00964 Gene

Localization for LINC00964 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00964 Gene

Pathways & Interactions for LINC00964 Gene

SuperPathways for LINC00964 Gene

No Data Available

Interacting Proteins for LINC00964 Gene

Gene Ontology (GO) - Biological Process for LINC00964 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC00964 Gene

Drugs & Compounds for LINC00964 Gene

No Compound Related Data Available

Transcripts for LINC00964 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00964 Gene

No ASD Table

Relevant External Links for LINC00964 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC00964 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00964 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00964 Gene

This gene is overexpressed in Testis (x26.8) and Prostate (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of LINC00964 Gene:

genes like me logo Genes that share expression patterns with LINC00964: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00964 Gene

Orthologs for LINC00964 Gene

Evolution for LINC00964 Gene

Gene Tree for LINC00964 (if available)
Gene Tree for LINC00964 (if available)

No data available for Orthologs for LINC00964 Gene

Paralogs for LINC00964 Gene

No data available for Paralogs for LINC00964 Gene

Variants for LINC00964 Gene

Sequence variations from dbSNP and Humsavar for LINC00964 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000534343 -- 124,941,319(+) TGCCA(C/G)CTTCC nc-transcript-variant, upstream-variant-2KB
rs1000648945 -- 124,940,995(+) CGGAG(A/G)AGGGG nc-transcript-variant, upstream-variant-2KB
rs1000677476 -- 124,947,620(+) ACAGG(A/G)ACAAA intron-variant
rs1001044392 -- 124,940,141(+) AGAGA(A/C)CTTTC nc-transcript-variant, upstream-variant-2KB
rs1001217518 -- 124,947,380(+) ATTAA(A/G)AGCAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00964 Gene

Variant ID Type Subtype PubMed ID
esv3891476 CNV gain 25118596
esv3576606 CNV gain 25503493
dgv7310n100 CNV gain 25217958
dgv1416e214 CNV gain 21293372

Relevant External Links for LINC00964 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00964 Gene

Disorders for LINC00964 Gene

Relevant External Links for LINC00964

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for LINC00964 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00964 Gene

Publications for LINC00964 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  3. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 60
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for LINC00964 Gene

Sources for LINC00964 Gene

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