Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC00955 Gene

Subcategory (RNA class) for LINC00955 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00955 Gene

  • Long Intergenic Non-Protein Coding RNA 955 2 3 5

External Ids for LINC00955 Gene

Summaries for LINC00955 Gene

GeneCards Summary for LINC00955 Gene

LINC00955 (Long Intergenic Non-Protein Coding RNA 955) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00955 Gene

Genomics for LINC00955 Gene

Regulatory Elements for LINC00955 Gene

Enhancers for LINC00955 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G003480 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.9 -92.9 -92906 7.7 HDGF ARID4B SIN3A ZBTB7B GLIS2 ELK1 ZNF143 ZNF263 REST ZNF592 LRPAP1 ENSG00000261643 LINC00955 DOK7 HTT-AS MSANTD1 GC04M003478 GC04P003490
GH04G003871 0.7 ENCODE 10.4 +294.8 294830 0.1 PKNOX1 MAZ SP3 KLF1 RFX1 SUZ12 NRF1 SP2 RBBP5 ZNF48 LINC00955 GC04P003863 GC04M003889
GH04G003472 0.5 dbSUPER 10.9 -103.7 -103719 1.9 RING1 RFX1 ZSCAN29 NOP14-AS1 LINC00955 LRPAP1 DOK7 LOC105374355 GC04P003463
GH04G003873 0.2 ENCODE 10.4 +296.2 296240 0.2 LINC00955 GC04P003863 GC04M003889
GH04G003575 0.7 ENCODE 0.7 +0.0 31 2.3 ELF3 NR2F1 YBX1 THRB RARA ZFHX2 ZNF366 TARDBP PCBP1 ZNF24 LINC00955 GC04P003605 GC04P003604 GC04P003606
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00955 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00955 Gene

Chromosome:
4
Start:
3,576,869 bp from pter
End:
3,590,985 bp from pter
Size:
14,117 bases
Orientation:
Plus strand

Genomic View for LINC00955 Gene

Genes around LINC00955 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00955 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00955 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00955 Gene

Proteins for LINC00955 Gene

Post-translational modifications for LINC00955 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00955 Gene

Domains & Families for LINC00955 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00955 Gene

Function for LINC00955 Gene

Phenotypes for LINC00955 Gene

GenomeRNAi human phenotypes for LINC00955:
genes like me logo Genes that share phenotypes with LINC00955: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC00955 Gene

Localization for LINC00955 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00955 Gene

Pathways & Interactions for LINC00955 Gene

SuperPathways for LINC00955 Gene

No Data Available

Interacting Proteins for LINC00955 Gene

Gene Ontology (GO) - Biological Process for LINC00955 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00955 Gene

Drugs & Compounds for LINC00955 Gene

No Compound Related Data Available

Transcripts for LINC00955 Gene

mRNA/cDNA for LINC00955 Gene

(1) REFSEQ mRNAs :
(4) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00955 Gene

No ASD Table

Relevant External Links for LINC00955 Gene

GeneLoc Exon Structure for
LINC00955
ECgene alternative splicing isoforms for
LINC00955

Expression for LINC00955 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00955 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00955 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (x34.1), Kidney - Cortex (x11.9), and Colon - Transverse (x5.4).

NURSA nuclear receptor signaling pathways regulating expression of LINC00955 Gene:

LINC00955
genes like me logo Genes that share expression patterns with LINC00955: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00955 Gene

Orthologs for LINC00955 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC00955 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LINC00955 35
  • 97 (a)
OneToOne
Species where no ortholog for LINC00955 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC00955 Gene

ENSEMBL:
Gene Tree for LINC00955 (if available)
TreeFam:
Gene Tree for LINC00955 (if available)

Paralogs for LINC00955 Gene

No data available for Paralogs for LINC00955 Gene

Variants for LINC00955 Gene

Sequence variations from dbSNP and Humsavar for LINC00955 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000102081 -- 3,581,433(+) CCTGG(C/G)GAGAG intron-variant
rs1000115074 -- 3,581,274(+) TGGGG(A/G)CTTTC intron-variant
rs1000334984 -- 3,586,196(+) GTAGA(G/T)ACTGG intron-variant
rs10004590 -- 3,580,347(+) catcc(A/G)tccgt intron-variant
rs10004593 -- 3,580,355(+) cgtcc(A/G)ttcat intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00955 Gene

Variant ID Type Subtype PubMed ID
dgv2713n106 CNV deletion 24896259
dgv5083n100 CNV gain 25217958
esv2198699 CNV deletion 18987734
esv2647558 CNV gain 19546169
esv2726912 CNV deletion 23290073
esv2726913 CNV deletion 23290073
esv2726914 CNV deletion 23290073
esv2726915 CNV deletion 23290073
esv2726916 CNV deletion 23290073
esv2726919 CNV deletion 23290073
esv2726920 CNV deletion 23290073
esv2726921 CNV deletion 23290073
esv2726922 CNV deletion 23290073
esv2759219 CNV gain 17122850
esv3362028 CNV duplication 20981092
esv3447097 CNV duplication 20981092
esv3563279 CNV deletion 23714750
nsv1073294 CNV deletion 25765185
nsv1073295 CNV deletion 25765185
nsv1073722 CNV deletion 25765185
nsv1074674 CNV deletion 25765185
nsv1077431 CNV duplication 25765185
nsv1117053 CNV deletion 24896259
nsv1118710 CNV duplication 24896259
nsv1125795 CNV tandem duplication 24896259
nsv1131759 CNV deletion 24896259
nsv1131760 CNV deletion 24896259
nsv1131761 CNV deletion 24896259
nsv1136806 CNV deletion 24896259
nsv1139204 CNV deletion 24896259
nsv1139809 CNV duplication 24896259
nsv1152115 CNV duplication 26484159
nsv1153209 CNV deletion 26484159
nsv292851 CNV insertion 16902084
nsv428435 CNV gain 18775914
nsv470004 CNV loss 18288195
nsv829840 CNV loss 17160897
nsv829841 CNV loss 17160897
nsv829842 CNV loss 17160897
nsv949768 CNV duplication 24416366
nsv967720 CNV duplication 23825009
nsv998670 CNV gain 25217958

Variation tolerance for LINC00955 Gene

Gene Damage Index Score: 17.29; 98.13% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC00955 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00955

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC00955 Gene

Disorders for LINC00955 Gene

Relevant External Links for LINC00955

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00955

No disorders were found for LINC00955 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00955 Gene

Publications for LINC00955 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC00955 Gene

Sources for LINC00955 Gene

Content
Loading form....