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Aliases for LINC00950 Gene

Subcategory (RNA class) for LINC00950 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for LINC00950 Gene

  • Long Intergenic Non-Protein Coding RNA 950 2 3 5
  • FP588 3

External Ids for LINC00950 Gene

ORGUL Members for LINC00950 Gene

Summaries for LINC00950 Gene

GeneCards Summary for LINC00950 Gene

LINC00950 (Long Intergenic Non-Protein Coding RNA 950) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00950 Gene

Genomics for LINC00950 Gene

Regulatory Elements for LINC00950 Gene

Enhancers for LINC00950 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G035844 1.3 Ensembl ENCODE dbSUPER 0.4 -13.4 -13386 3.3 HDAC1 HDGF FOXA2 ATF1 GATA2 FOS RELB ETV6 IKZF2 CREM TMEM8B HRCT1 OR13E1P LINC00950 FAM221B
GH09G035831 1.5 Ensembl ENCODE dbSUPER 0.3 -24.6 -24554 5.0 HDGF PKNOX1 SIN3A DMAP1 YY1 TBX21 PPARG KAT8 GLIS1 ETV4 TMEM8B TPM2 FAM221B LINC00950
GH09G035847 1 Ensembl ENCODE 0.4 -10.4 -10401 2.0 PKNOX1 TBL1XR1 MAX ASH2L ARID3A POLR2A NFYB FOS ETV6 RELB TMEM8B OR13J1 NDUFA5P4 ENSG00000227388 NPR2 SPAG8 HINT2 GBA2 CREB3 TLN1
GH09G035842 0.7 ENCODE 0.4 -15.8 -15800 0.2 MTA2 NR2F1 DPF2 TBX21 RELA SP1 IKZF1 EED ETV6 RELB TPM2 FAM221B LINC00950
GH09G035841 0.7 ENCODE 0.4 -16.4 -16409 1.0 MTA2 NR2F1 EBF1 DPF2 TBX21 RELA SP1 IKZF1 EED ETV6 TPM2 FAM221B LINC00950
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00950 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00950 Gene

Chromosome:
9
Start:
35,858,738 bp from pter
End:
35,865,518 bp from pter
Size:
6,781 bases
Orientation:
Plus strand

Genomic View for LINC00950 Gene

Genes around LINC00950 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00950 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00950 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00950 Gene

Proteins for LINC00950 Gene

Post-translational modifications for LINC00950 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00950 Gene

Domains & Families for LINC00950 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00950 Gene

Function for LINC00950 Gene

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00950 Gene

Localization for LINC00950 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00950 Gene

Pathways & Interactions for LINC00950 Gene

SuperPathways for LINC00950 Gene

No Data Available

Interacting Proteins for LINC00950 Gene

Gene Ontology (GO) - Biological Process for LINC00950 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00950 Gene

Drugs & Compounds for LINC00950 Gene

No Compound Related Data Available

Transcripts for LINC00950 Gene

mRNA/cDNA for LINC00950 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00950 Gene

No ASD Table

Relevant External Links for LINC00950 Gene

GeneLoc Exon Structure for
LINC00950
ECgene alternative splicing isoforms for
LINC00950

Expression for LINC00950 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00950 Gene

Protein differential expression in normal tissues from HIPED for LINC00950 Gene

This gene is overexpressed in Serum (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for LINC00950 Gene



Protein tissue co-expression partners for LINC00950 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00950 Gene:

LINC00950
genes like me logo Genes that share expression patterns with LINC00950: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00950 Gene

Orthologs for LINC00950 Gene

Evolution for LINC00950 Gene

ENSEMBL:
Gene Tree for LINC00950 (if available)
TreeFam:
Gene Tree for LINC00950 (if available)

No data available for Orthologs for LINC00950 Gene

Paralogs for LINC00950 Gene

No data available for Paralogs for LINC00950 Gene

Variants for LINC00950 Gene

Sequence variations from dbSNP and Humsavar for LINC00950 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000469125 -- 35,861,324(+) GTGTC(C/T)TCCCG nc-transcript-variant, utr-variant-3-prime
rs1000899613 -- 35,862,142(+) GTTAG(A/G)CCCTG nc-transcript-variant, utr-variant-3-prime
rs1001773771 -- 35,861,345(+) GTGGG(A/G/T)GGTGT nc-transcript-variant, utr-variant-3-prime
rs1001973475 -- 35,860,221(+) AGGCT(C/T)CTCTC upstream-variant-2KB, utr-variant-3-prime
rs1002582712 -- 35,865,173(+) TCTGC(A/G)CCTTG nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for LINC00950 Gene

Variant ID Type Subtype PubMed ID
nsv1125318 OTHER inversion 24896259
nsv831546 CNV loss 17160897

Relevant External Links for LINC00950 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00950

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00950 Gene

Disorders for LINC00950 Gene

Relevant External Links for LINC00950

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00950

No disorders were found for LINC00950 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00950 Gene

Publications for LINC00950 Gene

  1. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W. … Gibbs R.A. (Genome Res. 1997) 2 3 64
  2. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B. … Gibbs R.A. (Anal. Biochem. 1996) 2 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Large-scale cDNA transfection screening for genes related to cancer development and progression. (PMID: 15498874) Wan D. … Gu J. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 64

Products for LINC00950 Gene

Sources for LINC00950 Gene

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