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Aliases for LINC00920 Gene

Subcategory (RNA class) for LINC00920 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00920 Gene

  • Long Intergenic Non-Protein Coding RNA 920 2 3 5
  • CTD-2258A20.4 3

External Ids for LINC00920 Gene

Summaries for LINC00920 Gene

GeneCards Summary for LINC00920 Gene

LINC00920 (Long Intergenic Non-Protein Coding RNA 920) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00920 Gene

Genomics for LINC00920 Gene

Regulatory Elements for LINC00920 Gene

Enhancers for LINC00920 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G066406 1.8 FANTOM5 Ensembl ENCODE dbSUPER 45.4 -0.5 -454 4.1 FOXA2 MLX WRNIP1 SIN3A ARID4B DMAP1 ZNF2 ZNF48 SLC30A9 ZNF143 LINC00920 CDH5 CMTM2 CMTM4 DYNC1LI2 LOC106699570 CA7 RRAD CMTM3 GC16P066378
GH16G066378 1.7 FANTOM5 Ensembl ENCODE dbSUPER 34.7 -27.1 -27101 6.4 ATF1 INSM2 YBX1 PLRG1 ZBTB40 RFX5 ZNF155 GATA2 ZNF366 RCOR1 LINC00920 KIAA0895L E2F4 ENSG00000260465 CDH5 GC16P066378
GH16G066399 1.2 ENCODE dbSUPER 35.3 -8.5 -8515 1.6 FOXA2 ARID4B DMAP1 FEZF1 ZNF48 TCF12 SLC30A9 FOS SP5 NFYC LINC00920 CDH5 BEAN1 CMTM3 LOC106699570 DYNC1LI2 GC16P066378
GH16G066899 1.7 Ensembl ENCODE dbSUPER 11.1 +492.2 492204 3.4 CREB3L1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D SSRP1 ZNF610 CES2 E2F4 RRAD FAM96B LINC00920 TRADD FBXL8 HSF4 PLEKHG4 EXOC3L1
GH16G066357 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -44.8 -44837 12.6 FEZF1 RAD21 ZNF121 ZNF23 GATA2 ZNF143 FOS MIXL1 EGR2 ZNF263 KIAA0895L CDH5 LINC00920 LRRC36 PIR36503 RNA5SP428
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00920 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00920 Gene

Chromosome:
16
Start:
66,408,524 bp from pter
End:
66,412,135 bp from pter
Size:
3,612 bases
Orientation:
Plus strand

Genomic View for LINC00920 Gene

Genes around LINC00920 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00920 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00920 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00920 Gene

Proteins for LINC00920 Gene

Post-translational modifications for LINC00920 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00920 Gene

Domains & Families for LINC00920 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00920 Gene

Function for LINC00920 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00920 Gene

Localization for LINC00920 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00920 Gene

Pathways & Interactions for LINC00920 Gene

SuperPathways for LINC00920 Gene

No Data Available

Interacting Proteins for LINC00920 Gene

Gene Ontology (GO) - Biological Process for LINC00920 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00920 Gene

Drugs & Compounds for LINC00920 Gene

No Compound Related Data Available

Transcripts for LINC00920 Gene

mRNA/cDNA for LINC00920 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00920 Gene

No ASD Table

Relevant External Links for LINC00920 Gene

GeneLoc Exon Structure for
LINC00920
ECgene alternative splicing isoforms for
LINC00920

Expression for LINC00920 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00920 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00920 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.3) and Minor Salivary Gland (x4.9).

NURSA nuclear receptor signaling pathways regulating expression of LINC00920 Gene:

LINC00920
genes like me logo Genes that share expression patterns with LINC00920: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00920 Gene

Orthologs for LINC00920 Gene

Evolution for LINC00920 Gene

ENSEMBL:
Gene Tree for LINC00920 (if available)
TreeFam:
Gene Tree for LINC00920 (if available)

No data available for Orthologs for LINC00920 Gene

Paralogs for LINC00920 Gene

No data available for Paralogs for LINC00920 Gene

Variants for LINC00920 Gene

Sequence variations from dbSNP and Humsavar for LINC00920 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000295321 -- 66,409,759(+) CTGAT(-/AGG)AGGCG intron-variant
rs1000580919 -- 66,410,762(+) CAGGG(C/T)TTGTC nc-transcript-variant
rs1001034840 -- 66,411,037(+) TTGTA(C/T)TTTAT downstream-variant-500B
rs1001571743 -- 66,408,918(+) CCTGG(A/G)AACTC intron-variant
rs1001782649 -- 66,409,142(+) CAATG(G/T)TAACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00920 Gene

Variant ID Type Subtype PubMed ID
nsv572902 CNV loss 21841781
nsv833264 CNV gain 17160897

Relevant External Links for LINC00920 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00920

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00920 Gene

Disorders for LINC00920 Gene

Relevant External Links for LINC00920

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00920

No disorders were found for LINC00920 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00920 Gene

Publications for LINC00920 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for LINC00920 Gene

Sources for LINC00920 Gene

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