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Aliases for LINC00890 Gene

Subcategory (RNA class) for LINC00890 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00890 Gene

  • Long Intergenic Non-Protein Coding RNA 890 2 3 5
  • DKFZp686D0853 3

External Ids for LINC00890 Gene

Previous GeneCards Identifiers for LINC00890 Gene

  • GC0XP110755

Summaries for LINC00890 Gene

GeneCards Summary for LINC00890 Gene

LINC00890 (Long Intergenic Non-Protein Coding RNA 890) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00890 Gene

Genomics for LINC00890 Gene

Regulatory Elements for LINC00890 Gene

Enhancers for LINC00890 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF111511 0.8 Ensembl ENCODE 0.8 +0.2 247 0.6 SPI1 LINC00890 GC0XP111615
GH0XF111518 0.5 ENCODE 0.4 +7.9 7885 1.2 RFX1 LINC00890 GC0XP111615
GH0XF111549 0.8 ENCODE 0.3 +37.8 37849 0.9 SCRT1 ATF2 LINC00890 GC0XP111615
GH0XF111542 0.5 ENCODE 0.3 +31.9 31851 1.8 TEAD4 LINC00890 GC0XP111615
GH0XF111555 0.6 ENCODE 0.2 +44.3 44320 0.9 LINC00890 GC0XP111615
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LINC00890 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00890 Gene

Chromosome:
X
Start:
111,511,662 bp from pter
End:
111,522,399 bp from pter
Size:
10,738 bases
Orientation:
Plus strand

Genomic View for LINC00890 Gene

Genes around LINC00890 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00890 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00890 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00890 Gene

Proteins for LINC00890 Gene

  • Protein details for LINC00890 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GWG4
    Recommended name:
    Protein LINC00890
    Protein Accession:
    A0A1B0GWG4

    Protein attributes for LINC00890 Gene

    Size:
    89 amino acids
    Molecular mass:
    10088 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00890 Gene

Post-translational modifications for LINC00890 Gene

No Post-translational modifications

Other Protein References for LINC00890 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for LINC00890 Gene

Domains & Families for LINC00890 Gene

Protein Domains for LINC00890 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00890: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00890 Gene

Function for LINC00890 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00890 Gene

Localization for LINC00890 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00890 Gene

Pathways & Interactions for LINC00890 Gene

SuperPathways for LINC00890 Gene

No Data Available

Interacting Proteins for LINC00890 Gene

Gene Ontology (GO) - Biological Process for LINC00890 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00890 Gene

Transcripts for LINC00890 Gene

mRNA/cDNA for LINC00890 Gene

(13) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00890 Gene

No ASD Table

Relevant External Links for LINC00890 Gene

GeneLoc Exon Structure for
LINC00890
ECgene alternative splicing isoforms for
LINC00890

Expression for LINC00890 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00890 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00890 Gene

This gene is overexpressed in Uterus (x18.6), Prostate (x6.5), Liver (x5.8), and Cervix - Ectocervix (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of LINC00890 Gene:

LINC00890
genes like me logo Genes that share expression patterns with LINC00890: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC00890 Gene

Orthologs for LINC00890 Gene

Evolution for LINC00890 Gene

ENSEMBL:
Gene Tree for LINC00890 (if available)
TreeFam:
Gene Tree for LINC00890 (if available)

No data available for Orthologs for LINC00890 Gene

Paralogs for LINC00890 Gene

No data available for Paralogs for LINC00890 Gene

Variants for LINC00890 Gene

Sequence variations from dbSNP and Humsavar for LINC00890 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs111366445 -- 111,522,852(+) GCTAA(-/T/TT)TTTTT downstream-variant-500B
rs112040263 -- 111,516,386(+) TTTAA(A/G)AGTAC intron-variant
rs112462966 -- 111,519,499(+) GCTTT(C/T)GAAAG nc-transcript-variant
rs113766294 -- 111,513,060(+) CAGTT(-/ATTAA)ATTAA intron-variant
rs11378226 -- 111,517,673(+) GGCTA(-/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00890 Gene

Variant ID Type Subtype PubMed ID
esv3361732 OTHER inversion 20981092
esv3577046 CNV gain 25503493

Relevant External Links for LINC00890 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00890

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00890 Gene

Disorders for LINC00890 Gene

Relevant External Links for LINC00890

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00890

No disorders were found for LINC00890 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00890 Gene

Publications for LINC00890 Gene

No publications were found for LINC00890 Gene.

Products for LINC00890 Gene

Sources for LINC00890 Gene

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