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Aliases for LINC00890 Gene

Subcategory (RNA class) for LINC00890 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for LINC00890 Gene

  • Long Intergenic Non-Protein Coding RNA 890 2 3
  • DKFZp686D0853 3

External Ids for LINC00890 Gene

Previous GeneCards Identifiers for LINC00890 Gene

  • GC0XP110755

Summaries for LINC00890 Gene

GeneCards Summary for LINC00890 Gene

LINC00890 (Long Intergenic Non-Protein Coding RNA 890) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00890 Gene

Genomics for LINC00890 Gene

Genomic Location for LINC00890 Gene

Start:
111,511,662 bp from pter
End:
111,522,399 bp from pter
Size:
10,738 bases
Orientation:
Plus strand

Genomic View for LINC00890 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC00890 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00890 Gene

No data available for Regulatory Elements for LINC00890 Gene

Proteins for LINC00890 Gene

Post-translational modifications for LINC00890 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00890 Gene

Domains for LINC00890 Gene

Gene Families for LINC00890 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00890: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00890 Gene

Function for LINC00890 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC00890 Gene

Localization for LINC00890 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00890 Gene

Pathways for LINC00890 Gene

SuperPathways for LINC00890 Gene

No Data Available

Interacting Proteins for LINC00890 Gene

Gene Ontology (GO) - Biological Process for LINC00890 Gene

None

No data available for Pathways by source for LINC00890 Gene

Transcripts for LINC00890 Gene

mRNA/cDNA for LINC00890 Gene

(13) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00890 Gene

No ASD Table

Relevant External Links for LINC00890 Gene

GeneLoc Exon Structure for
LINC00890
ECgene alternative splicing isoforms for
LINC00890

Expression for LINC00890 Gene

mRNA expression in normal human tissues for LINC00890 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00890 Gene

This gene is overexpressed in Uterus (18.6), Prostate (6.5), Liver (5.8), and Cervix - Ectocervix (4.4).
genes like me logo Genes that share expressions with LINC00890: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for LINC00890 Gene

Orthologs for LINC00890 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for LINC00890 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia A730046J19Rik 16
Species with no ortholog for LINC00890:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC00890 Gene

ENSEMBL:
Gene Tree for LINC00890 (if available)
TreeFam:
Gene Tree for LINC00890 (if available)

Paralogs for LINC00890 Gene

No data available for Paralogs for LINC00890 Gene

Variants for LINC00890 Gene

Sequence variations from dbSNP and Humsavar for LINC00890 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs926621 -- 111,522,885(+) tagta(A/G)aaatg downstream-variant-500B
rs932423 -- 111,522,582(+) ATTGT(C/G)AAAAA downstream-variant-500B
rs4289995 -- 111,520,791(+) CTGCA(C/T)CATTC nc-transcript-variant
rs4459038 -- 111,521,004(+) AGAAC(A/G)CACAT nc-transcript-variant
rs4486375 -- 111,521,003(+) AAGAA(A/C)ACACA nc-transcript-variant

Relevant External Links for LINC00890 Gene

HapMap Linkage Disequilibrium report
LINC00890

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC00890 Gene

Disorders for LINC00890 Gene

No disorders were found for LINC00890 Gene.

No data available for UniProtKB/Swiss-Prot for LINC00890 Gene

Publications for LINC00890 Gene

No publications were found for LINC00890 Gene.

Products for LINC00890 Gene

Sources for LINC00890 Gene

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