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Aliases for LINC00885 Gene

Subcategory (RNA class) for LINC00885 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00885 Gene

  • Long Intergenic Non-Protein Coding RNA 885 2 3 5

External Ids for LINC00885 Gene

Previous GeneCards Identifiers for LINC00885 Gene

  • GC03P195872

Summaries for LINC00885 Gene

GeneCards Summary for LINC00885 Gene

LINC00885 (Long Intergenic Non-Protein Coding RNA 885) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00885 Gene

Genomics for LINC00885 Gene

Regulatory Elements for LINC00885 Gene

Enhancers for LINC00885 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G196177 2 FANTOM5 Ensembl ENCODE dbSUPER 6.1 +38.3 38343 7.1 HDGF FOXA2 PKNOX1 ARNT ZFP64 ARID4B SIN3A YBX1 FEZF1 ZNF2 TFRC RNU7-18P SDHAP2 RNF168 SLC51A LINC00885 TCTEX1D2 NRROS UBXN7 PCYT1A
GH03G196135 1.6 Ensembl ENCODE dbSUPER 7.6 -1.4 -1417 11.4 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 FOS SLC51A LINC00885 WDR53 GC03M196081
GH03G196190 1.9 FANTOM5 Ensembl ENCODE dbSUPER 6.3 +49.8 49765 5.6 HDGF PKNOX1 ARID4B YBX1 ZNF766 ZNF143 ZNF207 FOS SP5 REST RNU7-18P TFRC TM4SF19 RNU6-910P SLC51A UBXN7 LINC00885 MUC4 SMCO1 TNK2
GH03G196126 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -15.0 -15046 2.5 HDGF PKNOX1 ATF1 CREB3L1 ARNT TCF12 ZNF121 CBX5 GATA2 FOS TFRC MUC4 MUC20 LINC00885 GC03M196081
GH03G196119 2.1 VISTA FANTOM5 Ensembl ENCODE dbSUPER 0.3 -20.8 -20790 4.7 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A ZNF2 YY1 ZNF143 ZNF207 MUC4 TFRC RNU7-18P MUC20 FBXO45 GC03M196081 LINC00885
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00885 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00885 Gene

Chromosome:
3
Start:
196,142,636 bp from pter
End:
196,160,890 bp from pter
Size:
18,255 bases
Orientation:
Plus strand

Genomic View for LINC00885 Gene

Genes around LINC00885 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00885 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00885 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00885 Gene

Proteins for LINC00885 Gene

Post-translational modifications for LINC00885 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00885 Gene

Domains & Families for LINC00885 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00885 Gene

Function for LINC00885 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00885 Gene

Localization for LINC00885 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00885 Gene

Pathways & Interactions for LINC00885 Gene

SuperPathways for LINC00885 Gene

No Data Available

Interacting Proteins for LINC00885 Gene

Gene Ontology (GO) - Biological Process for LINC00885 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00885 Gene

Drugs & Compounds for LINC00885 Gene

No Compound Related Data Available

Transcripts for LINC00885 Gene

mRNA/cDNA for LINC00885 Gene

(1) REFSEQ mRNAs :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00885 Gene

No ASD Table

Relevant External Links for LINC00885 Gene

GeneLoc Exon Structure for
LINC00885
ECgene alternative splicing isoforms for
LINC00885

Expression for LINC00885 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00885 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00885 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x7.5), Skin - Sun Exposed (Lower leg) (x6.9), Bladder (x6.1), Esophagus - Mucosa (x5.8), Liver (x5.7), and Minor Salivary Gland (x4.9).

NURSA nuclear receptor signaling pathways regulating expression of LINC00885 Gene:

LINC00885
genes like me logo Genes that share expression patterns with LINC00885: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00885 Gene

Orthologs for LINC00885 Gene

Evolution for LINC00885 Gene

ENSEMBL:
Gene Tree for LINC00885 (if available)
TreeFam:
Gene Tree for LINC00885 (if available)

No data available for Orthologs for LINC00885 Gene

Paralogs for LINC00885 Gene

No data available for Paralogs for LINC00885 Gene

Variants for LINC00885 Gene

Sequence variations from dbSNP and Humsavar for LINC00885 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000008297 -- 196,148,071(+) TCAAA(A/T)TCAGG intron-variant
rs1000067507 -- 196,141,261(+) AAGCC(C/T)TCTGT upstream-variant-2KB
rs1000100862 -- 196,153,784(+) TTGGC(C/T)GGGAT intron-variant
rs1000213285 -- 196,158,978(+) ACACG(C/T)CACCA intron-variant
rs1000244334 -- 196,159,220(+) ACAGT(G/T)GCTCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00885 Gene

Variant ID Type Subtype PubMed ID
esv2759213 CNV gain+loss 17122850
esv3599273 CNV loss 21293372
nsv1002584 CNV gain 25217958
nsv1008512 CNV gain 25217958
nsv1009811 CNV gain 25217958
nsv593069 CNV gain 21841781
nsv593070 CNV loss 21841781
nsv593071 CNV gain 21841781
nsv997797 CNV gain 25217958

Relevant External Links for LINC00885 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00885

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00885 Gene

Disorders for LINC00885 Gene

Relevant External Links for LINC00885

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00885

No disorders were found for LINC00885 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00885 Gene

Publications for LINC00885 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC00885 Gene

Sources for LINC00885 Gene

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