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Aliases for LINC00869 Gene

Subcategory (RNA class) for LINC00869 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00869 Gene

  • Long Intergenic Non-Protein Coding RNA 869 2 3 5
  • FAM91A2 3 4
  • Family With Sequence Similarity 91, Member A2 3
  • KIAA0493 4

External Ids for LINC00869 Gene

Previous GeneCards Identifiers for LINC00869 Gene

  • GC01P149294

Summaries for LINC00869 Gene

GeneCards Summary for LINC00869 Gene

LINC00869 (Long Intergenic Non-Protein Coding RNA 869) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00869 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00869 Gene

Genomics for LINC00869 Gene

GeneHancer (GH) Regulatory Elements for LINC00869 Gene

Promoters and enhancers for LINC00869 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I149606 Promoter 0.5 Ensembl 550.8 +1.5 1467 3.2 LINC00869 ENSG00000275557 GC01M149618
GH01I149635 Promoter/Enhancer 1.3 Ensembl ENCODE 0.3 +30.2 30235 1.7 PKNOX1 ATF1 TAF9B ARNT ZNF76 ZNF335 POLR2B GLIS2 ATF7 EGR2 GC01P149637 ENSG00000206828 GC01M149618 LINC00869
GH01I149633 Enhancer 0.7 Ensembl 0.3 +27.5 27467 1.6 MEIS2 TAL1 E4F1 TCF12 NCOR1 CBFA2T2 ZNF680 MTA2 CBFA2T3 CEBPB GC01P149637 GC01M149618 LINC00869
GH01I149583 Promoter 0.5 EPDnew 0.3 -22.5 -22503 0.1 PPIAL4C LINC00869
GH01I149646 Promoter 0.5 Ensembl 0.3 +40.5 40467 1.2 TRN-GTT11-2 FAM91A2P LINC00869
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00869 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00869 Gene

Genomic Locations for LINC00869 Gene
chr1:149,606,334-149,679,523
(GRCh38/hg38)
Size:
73,190 bases
Orientation:
Plus strand
chr1:149,284,645-149,286,975
(GRCh37/hg19)

Genomic View for LINC00869 Gene

Genes around LINC00869 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00869 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00869 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00869 Gene

Proteins for LINC00869 Gene

  • Protein details for LINC00869 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C866-F91A2_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00869
    Protein Accession:
    P0C866

    Protein attributes for LINC00869 Gene

    Size:
    280 amino acids
    Molecular mass:
    30847 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00869 Gene

Post-translational modifications for LINC00869 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00869 Gene

Domains & Families for LINC00869 Gene

Protein Domains for LINC00869 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for LINC00869 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P0C866

UniProtKB/Swiss-Prot:

F91A2_HUMAN :
  • Belongs to the FAM91 family.
Family:
  • Belongs to the FAM91 family.
genes like me logo Genes that share domains with LINC00869: view

No data available for Gene Families for LINC00869 Gene

Function for LINC00869 Gene

Phenotypes From GWAS Catalog for LINC00869 Gene

Phenotypes for LINC00869 Gene

GenomeRNAi human phenotypes for LINC00869:
genes like me logo Genes that share phenotypes with LINC00869: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00869 Gene

Localization for LINC00869 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00869 Gene

Pathways & Interactions for LINC00869 Gene

SuperPathways for LINC00869 Gene

No Data Available

Interacting Proteins for LINC00869 Gene

Gene Ontology (GO) - Biological Process for LINC00869 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00869 Gene

Drugs & Compounds for LINC00869 Gene

No Compound Related Data Available

Transcripts for LINC00869 Gene

Unigene Clusters for LINC00869 Gene

Long intergenic non-protein coding RNA 869:
Representative Sequences:

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00869 Gene

No ASD Table

Relevant External Links for LINC00869 Gene

GeneLoc Exon Structure for
LINC00869
ECgene alternative splicing isoforms for
LINC00869

Expression for LINC00869 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00869 Gene

Protein differential expression in normal tissues from HIPED for LINC00869 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC00869 Gene



Protein tissue co-expression partners for LINC00869 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00869 Gene:

LINC00869

SOURCE GeneReport for Unigene cluster for LINC00869 Gene:

Hs.662922
genes like me logo Genes that share expression patterns with LINC00869: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00869 Gene

Orthologs for LINC00869 Gene

Evolution for LINC00869 Gene

ENSEMBL:
Gene Tree for LINC00869 (if available)
TreeFam:
Gene Tree for LINC00869 (if available)

No data available for Orthologs for LINC00869 Gene

Paralogs for LINC00869 Gene

(1) SIMAP similar genes for LINC00869 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with LINC00869: view

No data available for Paralogs for LINC00869 Gene

Variants for LINC00869 Gene

Sequence variations from dbSNP and Humsavar for LINC00869 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1060152 -- 149,607,236(+) A/C/G/T non_coding_transcript_variant
rs1061104 -- 149,647,566(+) T/C intron_variant, non_coding_transcript_variant
rs10708848 -- 149,637,653(+) TTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTT intron_variant
rs112560340 -- 149,641,665(+) TTTTTT/TTTTTTT intron_variant
rs113518084 -- 149,670,157(+) G/A genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00869 Gene

Variant ID Type Subtype PubMed ID
dgv73n67 CNV gain 20364138
nsv1076350 CNV duplication 25765185
nsv1078936 CNV deletion 25765185
nsv1121771 CNV deletion 24896259
nsv1124593 CNV duplication 24896259
nsv1139506 CNV duplication 24896259
nsv436741 CNV insertion 17901297
nsv508035 OTHER sequence alteration 20534489
nsv7958 CNV loss 18304495
nsv8003 CNV loss 18304495
nsv824564 CNV gain 20364138
nsv831492 CNV gain 17160897
nsv831503 CNV gain 17160897
nsv8325 CNV loss 18304495
nsv8336 CNV gain 18304495
nsv946226 CNV duplication 23825009
nsv946231 CNV duplication 23825009
nsv946372 CNV duplication 23825009
nsv952763 CNV duplication 24416366

Additional Variant Information for LINC00869 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00869

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00869 Gene

Disorders for LINC00869 Gene

Additional Disease Information for LINC00869

No disorders were found for LINC00869 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00869 Gene

Publications for LINC00869 Gene

  1. Characterization of cDNA clones in size-fractionated cDNA libraries from human brain. (PMID: 9455484) Seki N … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 1997) 2 3 4 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC00869 Gene

Sources for LINC00869 Gene

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