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Aliases for LINC00868 Gene

Subcategory (RNA class) for LINC00868 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00868 Gene

  • Long Intergenic Non-Protein Coding RNA 868 2 3 5
  • Chromosome 17 Open Reading Frame 52 2
  • C17orf52 3

External Ids for LINC00868 Gene

Previous HGNC Symbols for LINC00868 Gene

  • C17orf52

Previous GeneCards Identifiers for LINC00868 Gene

  • GC17P074848

Summaries for LINC00868 Gene

GeneCards Summary for LINC00868 Gene

LINC00868 (Long Intergenic Non-Protein Coding RNA 868) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00868 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00868 Gene

Genomics for LINC00868 Gene

GeneHancer (GH) Regulatory Elements for LINC00868 Gene

Promoters and enhancers for LINC00868 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I076845 Enhancer 0.8 ENCODE 0.8 -4.5 -4537 0.9 ATF1 SMAD1 TAF9B CHAMP1 TCF12 ZNF121 GATA2 ATF7 CREM SMARCA5 MFSD11 MXRA7 LINC00868 LINC02080
GH17I076839 Enhancer 1.1 Ensembl ENCODE 0.4 -10.2 -10151 0.8 HDGF FOXA2 ARID4B SIN3A ZNF2 ZNF143 ATF7 RUNX3 MIER2 REST MXRA7 MFSD11 LINC00868 LINC02080
GH17I076841 Enhancer 0.9 Ensembl ENCODE 0.4 -8.1 -8080 1.3 ZNF140 ZIC2 ZNF48 ZFHX2 GLIS2 RCOR1 CHD2 EGR2 MAZ CBFA2T3 ENSG00000267342 SRSF2 CDK3 TRIM65 PRPSAP1 MXRA7 LINC00868 LINC02080
GH17I076842 Enhancer 0.7 FANTOM5 0.4 -9.2 -9240 0.4 HDAC1 ZNF48 ZEB1 ZNF280A ZNF366 ZNF444 KLF8 EZH2 ZNF202 MAZ SRSF2 ENSG00000267342 TRIM65 SRP68 SEPT9 FBF1 METTL23 ENSG00000267546 CDK3 MGAT5B
GH17I076840 Enhancer 0.5 ENCODE 0.4 -9.6 -9582 0.2 ZNF366 ZNF48 ZBTB7A EZH2 MXRA7 LINC00868 LINC02080
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00868 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00868 Gene

Genomic Locations for LINC00868 Gene
chr17:76,850,176-76,861,836
(GRCh38/hg38)
Size:
11,661 bases
Orientation:
Plus strand
chr17:74,846,258-74,857,918
(GRCh37/hg19)

Genomic View for LINC00868 Gene

Genes around LINC00868 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00868 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00868 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00868 Gene

Proteins for LINC00868 Gene

Post-translational modifications for LINC00868 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00868 Gene

Domains & Families for LINC00868 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00868 Gene

Function for LINC00868 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00868 Gene

Localization for LINC00868 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00868 Gene

Pathways & Interactions for LINC00868 Gene

SuperPathways for LINC00868 Gene

No Data Available

Interacting Proteins for LINC00868 Gene

Gene Ontology (GO) - Biological Process for LINC00868 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00868 Gene

Drugs & Compounds for LINC00868 Gene

No Compound Related Data Available

Transcripts for LINC00868 Gene

mRNA/cDNA for LINC00868 Gene

(1) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00868 Gene

Long intergenic non-protein coding RNA 868:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00868 Gene

No ASD Table

Relevant External Links for LINC00868 Gene

GeneLoc Exon Structure for
LINC00868
ECgene alternative splicing isoforms for
LINC00868

Expression for LINC00868 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00868 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00868 Gene

This gene is overexpressed in Testis (x32.7) and Skin - Not Sun Exposed (Suprapubic) (x5.8).

NURSA nuclear receptor signaling pathways regulating expression of LINC00868 Gene:

LINC00868

SOURCE GeneReport for Unigene cluster for LINC00868 Gene:

Hs.645372
genes like me logo Genes that share expression patterns with LINC00868: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00868 Gene

Orthologs for LINC00868 Gene

Evolution for LINC00868 Gene

ENSEMBL:
Gene Tree for LINC00868 (if available)
TreeFam:
Gene Tree for LINC00868 (if available)

No data available for Orthologs for LINC00868 Gene

Paralogs for LINC00868 Gene

No data available for Paralogs for LINC00868 Gene

Variants for LINC00868 Gene

Sequence variations from dbSNP and Humsavar for LINC00868 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000297782 -- 76,858,119(+) C/G/T intron_variant
rs1000845455 -- 76,858,851(+) G/A intron_variant
rs1001276082 -- 76,859,056(+) C/A intron_variant
rs1001576765 -- 76,857,638(+) G/A intron_variant
rs1001849363 -- 76,858,433(+) TCTTTC/TC intron_variant

Additional Variant Information for LINC00868 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00868

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00868 Gene

Disorders for LINC00868 Gene

Additional Disease Information for LINC00868

No disorders were found for LINC00868 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00868 Gene

Publications for LINC00868 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for LINC00868 Gene

Sources for LINC00868 Gene

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