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Aliases for LINC00868 Gene

Subcategory (RNA class) for LINC00868 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00868 Gene

  • Long Intergenic Non-Protein Coding RNA 868 2 3 5
  • Chromosome 17 Open Reading Frame 52 2
  • C17orf52 3

External Ids for LINC00868 Gene

Previous HGNC Symbols for LINC00868 Gene

  • C17orf52

Previous GeneCards Identifiers for LINC00868 Gene

  • GC17P074848

Summaries for LINC00868 Gene

GeneCards Summary for LINC00868 Gene

LINC00868 (Long Intergenic Non-Protein Coding RNA 868) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00868 Gene

Genomics for LINC00868 Gene

Regulatory Elements for LINC00868 Gene

Enhancers for LINC00868 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F076845 0.9 ENCODE 0.8 -4.5 -4538 0.9 CBX3 ATF1 TBL1XR1 ZNF121 GATA2 CREM SMARCA5 JUNB SMARCA4 IKZF1 MFSD11 MXRA7 LINC00868 LINC02080
GH17F076839 1.2 Ensembl ENCODE 0.4 -10.1 -10141 1.3 HDGF ARID4B THRB ZNF48 ZNF2 RAD21 ZNF366 ZNF143 EGR2 THAP11 MXRA7 MFSD11 LINC00868 LINC02080
GH17F076841 1 Ensembl ENCODE 0.4 -8.1 -8081 1.3 PKNOX1 TAL1 ZNF140 ZNF48 ZIC2 ZFHX2 GLIS2 ZNF652 EZH2 EGR2 ENSG00000267342 CDK3 TRIM65 MXRA7 LINC00868 LINC02080
GH17F076840 0.7 FANTOM5 0.4 -9.2 -9240 0.4 ZNF202 MAZ ZBTB2 ZNF48 ZBTB7A ZEB1 ZNF292 ZFHX2 ZNF366 IKZF1 ENSG00000267342 TRIM65 METTL23 ENSG00000267546 CDK3 MGAT5B UBE2O LINC00868 LINC02080
GH17F076816 0.9 Ensembl ENCODE 0.3 -33.4 -33376 0.4 CTCF ZNF654 TRIM22 ZBTB8A REST ZIC2 RAD21 ZBTB48 GLIS1 SMC3 LINC02080 LINC00868
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00868 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00868 Gene

Chromosome:
17
Start:
76,850,176 bp from pter
End:
76,861,836 bp from pter
Size:
11,661 bases
Orientation:
Plus strand

Genomic View for LINC00868 Gene

Genes around LINC00868 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00868 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00868 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00868 Gene

Proteins for LINC00868 Gene

Post-translational modifications for LINC00868 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00868 Gene

Domains & Families for LINC00868 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00868 Gene

Function for LINC00868 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00868 Gene

Localization for LINC00868 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00868 Gene

Pathways & Interactions for LINC00868 Gene

SuperPathways for LINC00868 Gene

No Data Available

Interacting Proteins for LINC00868 Gene

Gene Ontology (GO) - Biological Process for LINC00868 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00868 Gene

Transcripts for LINC00868 Gene

mRNA/cDNA for LINC00868 Gene

(1) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00868 Gene

Long intergenic non-protein coding RNA 868:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00868 Gene

No ASD Table

Relevant External Links for LINC00868 Gene

GeneLoc Exon Structure for
LINC00868
ECgene alternative splicing isoforms for
LINC00868

Expression for LINC00868 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00868 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00868 Gene

This gene is overexpressed in Testis (x32.7) and Skin - Not Sun Exposed (Suprapubic) (x5.8).

NURSA nuclear receptor signaling pathways regulating expression of LINC00868 Gene:

LINC00868

SOURCE GeneReport for Unigene cluster for LINC00868 Gene:

Hs.645372
genes like me logo Genes that share expression patterns with LINC00868: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC00868 Gene

Orthologs for LINC00868 Gene

Evolution for LINC00868 Gene

ENSEMBL:
Gene Tree for LINC00868 (if available)
TreeFam:
Gene Tree for LINC00868 (if available)

No data available for Orthologs for LINC00868 Gene

Paralogs for LINC00868 Gene

No data available for Paralogs for LINC00868 Gene

Variants for LINC00868 Gene

Sequence variations from dbSNP and Humsavar for LINC00868 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs11077871 -- 76,860,129(+) aaaaa(C/T)acaca intron-variant
rs111480112 -- 76,858,649(+) CCTAG(C/T)TAATT intron-variant
rs111772153 -- 76,857,942(+) ACGAG(A/G)TCAGG intron-variant
rs112024327 -- 76,858,423(+) TCTAC(A/G)GATAA intron-variant
rs112604691 -- 76,856,411(+) GTGCT(G/T)CCAGG intron-variant

Relevant External Links for LINC00868 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00868

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00868 Gene

Disorders for LINC00868 Gene

Relevant External Links for LINC00868

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00868

No disorders were found for LINC00868 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00868 Gene

Publications for LINC00868 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for LINC00868 Gene

Sources for LINC00868 Gene

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