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Aliases for LINC00862 Gene

Subcategory (RNA class) for LINC00862 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for LINC00862 Gene

  • Long Intergenic Non-Protein Coding RNA 862 2 3
  • Small Integral Membrane Protein 16 2 3 4
  • C1orf98 3 4
  • SMIM16 3 4
  • Chromosome 1 Open Reading Frame 98 2

External Ids for LINC00862 Gene

Previous HGNC Symbols for LINC00862 Gene

  • C1orf98
  • SMIM16

Summaries for LINC00862 Gene

GeneCards Summary for LINC00862 Gene

LINC00862 (Long Intergenic Non-Protein Coding RNA 862) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00862 Gene

Genomics for LINC00862 Gene

Genomic Location for LINC00862 Gene

Start:
200,342,544 bp from pter
End:
200,374,354 bp from pter
Size:
31,811 bases
Orientation:
Minus strand

Genomic View for LINC00862 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC00862 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00862 Gene

No data available for Regulatory Elements for LINC00862 Gene

Proteins for LINC00862 Gene

  • Protein details for LINC00862 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NCI5-SIM16_HUMAN
    Recommended name:
    Putative transmembrane protein encoded by LINC00862
    Protein Accession:
    A6NCI5
    Secondary Accessions:

    Protein attributes for LINC00862 Gene

    Size:
    91 amino acids
    Molecular mass:
    10419 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00862 Gene

Proteomics data for LINC00862 Gene at MOPED

Post-translational modifications for LINC00862 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00862 Gene

Domains for LINC00862 Gene

Gene Families for LINC00862 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for LINC00862 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00862: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00862 Gene

Function for LINC00862 Gene

miRNA for LINC00862 Gene

miRTarBase miRNAs that target LINC00862

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for LINC00862 Gene

Localization for LINC00862 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LINC00862 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for LINC00862 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with LINC00862: view

No data available for Subcellular locations from COMPARTMENTS for LINC00862 Gene

Pathways for LINC00862 Gene

SuperPathways for LINC00862 Gene

No Data Available

Interacting Proteins for LINC00862 Gene

Gene Ontology (GO) - Biological Process for LINC00862 Gene

None

No data available for Pathways by source for LINC00862 Gene

Transcripts for LINC00862 Gene

mRNA/cDNA for LINC00862 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00862 Gene

Long intergenic non-protein coding RNA 862:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00862 Gene

No ASD Table

Relevant External Links for LINC00862 Gene

GeneLoc Exon Structure for
LINC00862
ECgene alternative splicing isoforms for
LINC00862

Expression for LINC00862 Gene

mRNA expression in normal human tissues for LINC00862 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00862 Gene

This gene is overexpressed in Whole Blood (12.9) and Liver (6.5).

SOURCE GeneReport for Unigene cluster for LINC00862 Gene Hs.434694

genes like me logo Genes that share expressions with LINC00862: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for LINC00862 Gene

Orthologs for LINC00862 Gene

Evolution for LINC00862 Gene

ENSEMBL:
Gene Tree for LINC00862 (if available)
TreeFam:
Gene Tree for LINC00862 (if available)

No data available for Orthologs for LINC00862 Gene

Paralogs for LINC00862 Gene

No data available for Paralogs for LINC00862 Gene

Variants for LINC00862 Gene

Sequence variations from dbSNP and Humsavar for LINC00862 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs946551 -- 200,365,407(+) GACTC(C/T)GTATC intron-variant
rs1339574 -- 200,367,292(+) AAGGA(C/T)ACCTA intron-variant
rs1572771 -- 200,349,948(+) gacca(C/T)aaaat intron-variant
rs2011755 -- 200,365,229(+) CAACA(C/T)GGTGA intron-variant
rs2011967 -- 200,365,355(+) CTGTA(A/G)TGAGC intron-variant

Relevant External Links for LINC00862 Gene

HapMap Linkage Disequilibrium report
LINC00862

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC00862 Gene

Disorders for LINC00862 Gene

No disorders were found for LINC00862 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for LINC00862 Gene

Publications for LINC00862 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for LINC00862 Gene

Sources for LINC00862 Gene

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