Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC00862 Gene

Subcategory (RNA class) for LINC00862 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00862 Gene

  • Long Intergenic Non-Protein Coding RNA 862 2 3 5
  • Small Integral Membrane Protein 16 2 3 4
  • C1orf98 3 4
  • SMIM16 3 4
  • Chromosome 1 Open Reading Frame 98 2

External Ids for LINC00862 Gene

Previous HGNC Symbols for LINC00862 Gene

  • C1orf98
  • SMIM16

Previous GeneCards Identifiers for LINC00862 Gene

  • GC01M200312

Summaries for LINC00862 Gene

GeneCards Summary for LINC00862 Gene

LINC00862 (Long Intergenic Non-Protein Coding RNA 862) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00862 Gene

Genomics for LINC00862 Gene

Regulatory Elements for LINC00862 Gene

Enhancers for LINC00862 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G200351 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.7 +47.0 46954 4.9 PKNOX1 SCRT2 FOS ETV6 IKZF2 CBFB ZBTB11 CEBPB JUNB ZNF426 ZNF281 LINC00862 ENSG00000230623 DDX59 GC01P200359 GC01P200337
GH01G200483 1.2 Ensembl ENCODE 5.9 -83.0 -82967 1.3 PKNOX1 ATF1 WRNIP1 SIN3A BRCA1 TCF12 GATA2 FOS DEK JUNB ZNF281 LINC00862 ENSG00000282849 KIF14
GH01G200395 0.7 Ensembl 0.4 +5.4 5405 0.2 TEAD1 BACH1 MAFG HMG20A JUND MAFF ZNF316 POU5F1 NFE2 EMSY LINC00862 GC01M200383
GH01G200388 0.7 ENCODE dbSUPER 0.4 +11.7 11745 0.8 ZFHX2 EGR2 GC01M200383 LINC00862
GH01G200391 0.5 ENCODE 0.4 +8.3 8320 0.8 OSR2 CEBPB POU5F1 WT1 GC01M200383 LINC00862
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00862 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00862 Gene

Chromosome:
1
Start:
200,253,419 bp from pter
End:
200,400,705 bp from pter
Size:
147,287 bases
Orientation:
Minus strand

Genomic View for LINC00862 Gene

Genes around LINC00862 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00862 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00862 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00862 Gene

Proteins for LINC00862 Gene

  • Protein details for LINC00862 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NCI5-SIM16_HUMAN
    Recommended name:
    Putative transmembrane protein encoded by LINC00862
    Protein Accession:
    A6NCI5

    Protein attributes for LINC00862 Gene

    Size:
    91 amino acids
    Molecular mass:
    10419 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00862 Gene

Post-translational modifications for LINC00862 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00862 Gene

Domains & Families for LINC00862 Gene

Protein Domains for LINC00862 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00862: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00862 Gene

Function for LINC00862 Gene

Animal Model Products

miRNA for LINC00862 Gene

miRTarBase miRNAs that target LINC00862

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC00862 Gene

Localization for LINC00862 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LINC00862 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00862 gene
Compartment Confidence
extracellular 3
mitochondrion 1
cytosol 1

Gene Ontology (GO) - Cellular Components for LINC00862 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with LINC00862: view

Pathways & Interactions for LINC00862 Gene

SuperPathways for LINC00862 Gene

No Data Available

Interacting Proteins for LINC00862 Gene

Gene Ontology (GO) - Biological Process for LINC00862 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00862 Gene

Transcripts for LINC00862 Gene

mRNA/cDNA for LINC00862 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00862 Gene

Long intergenic non-protein coding RNA 862:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00862 Gene

No ASD Table

Relevant External Links for LINC00862 Gene

GeneLoc Exon Structure for
LINC00862
ECgene alternative splicing isoforms for
LINC00862

Expression for LINC00862 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00862 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00862 Gene

This gene is overexpressed in Whole Blood (x12.9) and Liver (x6.5).

NURSA nuclear receptor signaling pathways regulating expression of LINC00862 Gene:

LINC00862

SOURCE GeneReport for Unigene cluster for LINC00862 Gene:

Hs.434694

Evidence on tissue expression from TISSUES for LINC00862 Gene

  • Nervous system(4)
genes like me logo Genes that share expression patterns with LINC00862: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00862 Gene

Orthologs for LINC00862 Gene

Evolution for LINC00862 Gene

ENSEMBL:
Gene Tree for LINC00862 (if available)
TreeFam:
Gene Tree for LINC00862 (if available)

No data available for Orthologs for LINC00862 Gene

Paralogs for LINC00862 Gene

No data available for Paralogs for LINC00862 Gene

Variants for LINC00862 Gene

Sequence variations from dbSNP and Humsavar for LINC00862 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000013861 -- 200,361,296(+) AGACC(C/T)CTTTC intron-variant
rs1000058929 -- 200,360,534(+) CTCTA(A/T)GGGGA intron-variant
rs1000111349 -- 200,367,493(+) GCTGG(A/G)CATAG intron-variant
rs1000149239 -- 200,361,000(+) CCCAG(A/G)TCAGG intron-variant
rs1000175446 -- 200,347,411(+) CTCCG(C/G)GGTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00862 Gene

Variant ID Type Subtype PubMed ID
dgv23n21 CNV gain 19592680
nsv1144422 CNV deletion 24896259
nsv518035 CNV loss 19592680

Relevant External Links for LINC00862 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00862

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00862 Gene

Disorders for LINC00862 Gene

Relevant External Links for LINC00862

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00862

No disorders were found for LINC00862 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00862 Gene

Publications for LINC00862 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC00862 Gene

Sources for LINC00862 Gene

Content
Loading form....