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Aliases for LINC00854 Gene

Subcategory (RNA class) for LINC00854 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00854 Gene

  • Long Intergenic Non-Protein Coding RNA 854 2 3 5
  • TMEM106A Antisense RNA 1 (Non-Protein Coding) 2 3
  • TMEM106A Antisense RNA 1 (Tail To Tail) 2 3
  • TMEM106A Antisense RNA 1 2
  • TMEM106A-AS1 3

External Ids for LINC00854 Gene

Previous HGNC Symbols for LINC00854 Gene

  • TMEM106A-AS1

Previous GeneCards Identifiers for LINC00854 Gene

  • GC17M041370

Summaries for LINC00854 Gene

GeneCards Summary for LINC00854 Gene

LINC00854 (Long Intergenic Non-Protein Coding RNA 854) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00854 Gene

Genomics for LINC00854 Gene

Regulatory Elements for LINC00854 Gene

Enhancers for LINC00854 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G044197 1.8 FANTOM5 ENCODE dbSUPER 5.1 -894.0 -893978 4.3 CREB3L1 MLX AGO1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF548 SP3 ASB16-AS1 DHX8 TMUB2 GRN LINC00854 NAGS DBF4B ATXN7L3 TMEM101 HDAC5
GH17G044245 1.4 Ensembl ENCODE 4.4 -941.5 -941512 2.5 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A ZNF2 YY1 ZNF766 FOS GJC1 GPATCH8 ASB16-AS1 ASB16 LINC00854 GC17M044250 SHC1P2
GH17G043309 1.2 Ensembl ENCODE 0.7 -4.6 -4631 1.1 ATF1 ARNT WRNIP1 ARID4B SIN3A ZNF121 CBX5 ZNF143 DEK ZNF263 NBR2 VAT1 RND2 LINC00854 GC17P043358
GH17G043322 1.7 Ensembl ENCODE dbSUPER 0.4 -17.8 -17766 1.6 MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 ENSG00000267340 ENSG00000267002 ASB16-AS1 HMGN1P29 DHX8 NBR2 ENSG00000267765 HSD17B1 CCR10 LINC00910
GH17G043314 1.6 Ensembl ENCODE dbSUPER 0.4 -10.5 -10516 2.6 HNRNPUL1 PKNOX1 WRNIP1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF302 ZNF143 NBR2 AOC3 NBR1 VAT1 RND2 AOC4P PTGES3L PSMC3IP LINC00854 GC17P043358
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00854 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00854 Gene

Chromosome:
17
Start:
43,216,941 bp from pter
End:
43,305,397 bp from pter
Size:
88,457 bases
Orientation:
Minus strand

Genomic View for LINC00854 Gene

Genes around LINC00854 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00854 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00854 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00854 Gene

Proteins for LINC00854 Gene

  • Protein details for LINC00854 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GTD9
    Recommended name:
    Long intergenic non-protein coding RNA 854
    Protein Accession:
    A0A1B0GTD9

    Protein attributes for LINC00854 Gene

    Size:
    86 amino acids
    Molecular mass:
    9397 Da
    Quaternary structure:
    No Data Available
  • Protein details for LINC00854 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GU98
    Recommended name:
    Long intergenic non-protein coding RNA 854
    Protein Accession:
    A0A1B0GU98

    Protein attributes for LINC00854 Gene

    Size:
    107 amino acids
    Molecular mass:
    11774 Da
    Quaternary structure:
    No Data Available
  • Protein details for LINC00854 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GVJ5
    Recommended name:
    Long intergenic non-protein coding RNA 854
    Protein Accession:
    A0A1B0GVJ5

    Protein attributes for LINC00854 Gene

    Size:
    87 amino acids
    Molecular mass:
    9468 Da
    Quaternary structure:
    No Data Available
  • Protein details for LINC00854 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GVQ3
    Recommended name:
    Long intergenic non-protein coding RNA 854
    Protein Accession:
    A0A1B0GVQ3

    Protein attributes for LINC00854 Gene

    Size:
    168 amino acids
    Molecular mass:
    19413 Da
    Quaternary structure:
    No Data Available
  • Protein details for LINC00854 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GVX4
    Recommended name:
    HCG2045121
    Protein Accession:
    A0A1B0GVX4

    Protein attributes for LINC00854 Gene

    Size:
    137 amino acids
    Molecular mass:
    15597 Da
    Quaternary structure:
    No Data Available
  • Protein details for LINC00854 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GVZ7
    Recommended name:
    Long intergenic non-protein coding RNA 854
    Protein Accession:
    A0A1B0GVZ7

    Protein attributes for LINC00854 Gene

    Size:
    87 amino acids
    Molecular mass:
    10188 Da
    Quaternary structure:
    No Data Available
  • Protein details for LINC00854 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GW31
    Recommended name:
    Long intergenic non-protein coding RNA 854
    Protein Accession:
    A0A1B0GW31

    Protein attributes for LINC00854 Gene

    Size:
    39 amino acids
    Molecular mass:
    4245 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00854 Gene

Post-translational modifications for LINC00854 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00854 Gene

Domains & Families for LINC00854 Gene

Protein Domains for LINC00854 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00854: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00854 Gene

Function for LINC00854 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00854 Gene

Localization for LINC00854 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00854 Gene

Pathways & Interactions for LINC00854 Gene

SuperPathways for LINC00854 Gene

No Data Available

Interacting Proteins for LINC00854 Gene

Gene Ontology (GO) - Biological Process for LINC00854 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00854 Gene

Drugs & Compounds for LINC00854 Gene

No Compound Related Data Available

Transcripts for LINC00854 Gene

mRNA/cDNA for LINC00854 Gene

(2) Additional mRNA sequences :
(16) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00854 Gene

Long intergenic non-protein coding RNA 854:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00854 Gene

No ASD Table

Relevant External Links for LINC00854 Gene

GeneLoc Exon Structure for
LINC00854
ECgene alternative splicing isoforms for
LINC00854

Expression for LINC00854 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00854 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00854 Gene

This gene is overexpressed in Testis (x21.7).

NURSA nuclear receptor signaling pathways regulating expression of LINC00854 Gene:

LINC00854

SOURCE GeneReport for Unigene cluster for LINC00854 Gene:

Hs.546898
genes like me logo Genes that share expression patterns with LINC00854: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00854 Gene

Orthologs for LINC00854 Gene

Evolution for LINC00854 Gene

ENSEMBL:
Gene Tree for LINC00854 (if available)
TreeFam:
Gene Tree for LINC00854 (if available)

No data available for Orthologs for LINC00854 Gene

Paralogs for LINC00854 Gene

No data available for Paralogs for LINC00854 Gene

Variants for LINC00854 Gene

Sequence variations from dbSNP and Humsavar for LINC00854 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000376047 -- 43,223,441(+) CTGCT(A/T)AGGAG intron-variant
rs1000406989 -- 43,226,186(+) TTTAC(A/G)AAAAA intron-variant
rs1000424919 -- 43,229,538(+) AAACA(A/G)AAAGA intron-variant
rs1001284195 -- 43,221,497(+) TATTG(C/G)TGGAT nc-transcript-variant
rs1001345434 -- 43,222,245(+) CTGCA(-/ACCTCC)ACCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00854 Gene

Variant ID Type Subtype PubMed ID
dgv1466n106 OTHER inversion 24896259
esv2672913 CNV deletion 23128226
esv33998 OTHER inversion 15654335
esv6011 OTHER inversion 19470904
nsv1079031 OTHER inversion 25765185
nsv1146669 OTHER inversion 26484159
nsv1160487 CNV duplication 26073780
nsv510712 CNV deletion 20534489
nsv962328 CNV duplication 23825009

Relevant External Links for LINC00854 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00854

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00854 Gene

Disorders for LINC00854 Gene

Relevant External Links for LINC00854

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00854

No disorders were found for LINC00854 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00854 Gene

Publications for LINC00854 Gene

  1. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. (PMID: 22196729) Ulitsky I. … Bartel D.P. (Cell 2011) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC00854 Gene

Sources for LINC00854 Gene

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