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Aliases for LINC00854 Gene

Subcategory (RNA class) for LINC00854 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for LINC00854 Gene

  • Long Intergenic Non-Protein Coding RNA 854 2 3
  • TMEM106A Antisense RNA 1 (Non-Protein Coding) 2 3
  • TMEM106A Antisense RNA 1 (Tail To Tail) 2 3
  • TMEM106A Antisense RNA 1 2
  • TMEM106A-AS1 3

External Ids for LINC00854 Gene

ORGUL Members for LINC00854 Gene

Previous HGNC Symbols for LINC00854 Gene

  • TMEM106A-AS1

Previous GeneCards Identifiers for LINC00854 Gene

  • GC17M041370

Summaries for LINC00854 Gene

GeneCards Summary for LINC00854 Gene

LINC00854 (Long Intergenic Non-Protein Coding RNA 854) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00854 Gene

Genomics for LINC00854 Gene

Genomic Location for LINC00854 Gene

Start:
43,216,941 bp from pter
End:
43,305,976 bp from pter
Size:
89,036 bases
Orientation:
Minus strand

Genomic View for LINC00854 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC00854 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00854 Gene

No data available for Regulatory Elements for LINC00854 Gene

Proteins for LINC00854 Gene

Post-translational modifications for LINC00854 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00854 Gene

Domains for LINC00854 Gene

Gene Families for LINC00854 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00854: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00854 Gene

Function for LINC00854 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC00854 Gene

Localization for LINC00854 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00854 Gene

Pathways for LINC00854 Gene

SuperPathways for LINC00854 Gene

No Data Available

Interacting Proteins for LINC00854 Gene

Gene Ontology (GO) - Biological Process for LINC00854 Gene

None

No data available for Pathways by source for LINC00854 Gene

Transcripts for LINC00854 Gene

mRNA/cDNA for LINC00854 Gene

(2) Additional mRNA sequences :
(16) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00854 Gene

Long intergenic non-protein coding RNA 854:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00854 Gene

No ASD Table

Relevant External Links for LINC00854 Gene

GeneLoc Exon Structure for
LINC00854
ECgene alternative splicing isoforms for
LINC00854

Expression for LINC00854 Gene

mRNA expression in normal human tissues for LINC00854 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00854 Gene

This gene is overexpressed in Testis (21.7).

SOURCE GeneReport for Unigene cluster for LINC00854 Gene Hs.546898

genes like me logo Genes that share expressions with LINC00854: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for LINC00854 Gene

Orthologs for LINC00854 Gene

Evolution for LINC00854 Gene

ENSEMBL:
Gene Tree for LINC00854 (if available)
TreeFam:
Gene Tree for LINC00854 (if available)

No data available for Orthologs for LINC00854 Gene

Paralogs for LINC00854 Gene

No data available for Paralogs for LINC00854 Gene

Variants for LINC00854 Gene

Sequence variations from dbSNP and Humsavar for LINC00854 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs599921 -- 43,230,069(+) AGCTG(A/G)GGAGG intron-variant
rs599986 -- 43,230,122(+) AGCCC(C/T)GTGAT intron-variant
rs1060930 -- 43,230,069(+) GCTGA(C/G)GAGGA intron-variant
rs1060934 -- 43,230,186(+) CTATG(A/C)GGTAC intron-variant
rs1133320 -- 43,223,574(-) AACAC(C/T)GGGTA nc-transcript-variant

Relevant External Links for LINC00854 Gene

HapMap Linkage Disequilibrium report
LINC00854

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC00854 Gene

Disorders for LINC00854 Gene

No disorders were found for LINC00854 Gene.

No data available for UniProtKB/Swiss-Prot for LINC00854 Gene

Publications for LINC00854 Gene

  1. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. (PMID: 22196729) Ulitsky I. … Bartel D.P. (Cell 2011) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for LINC00854 Gene

Sources for LINC00854 Gene

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