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Aliases for LINC00854 Gene

Subcategory (RNA class) for LINC00854 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC00854 Gene

  • Long Intergenic Non-Protein Coding RNA 854 2 3 5
  • TMEM106A Antisense RNA 1 (Non-Protein Coding) 2 3
  • TMEM106A Antisense RNA 1 (Tail To Tail) 2 3
  • TMEM106A Antisense RNA 1 2
  • TMEM106A-AS1 3

External Ids for LINC00854 Gene

Previous HGNC Symbols for LINC00854 Gene

  • TMEM106A-AS1

Previous GeneCards Identifiers for LINC00854 Gene

  • GC17M041370

Summaries for LINC00854 Gene

GeneCards Summary for LINC00854 Gene

LINC00854 (Long Intergenic Non-Protein Coding RNA 854) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00854 Gene

Genomics for LINC00854 Gene

Regulatory Elements for LINC00854 Gene

Enhancers for LINC00854 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around LINC00854 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00854 Gene

43,216,941 bp from pter
43,305,397 bp from pter
88,457 bases
Minus strand

Genomic View for LINC00854 Gene

Genes around LINC00854 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00854 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00854 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00854 Gene

Proteins for LINC00854 Gene

Post-translational modifications for LINC00854 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00854 Gene

Domains & Families for LINC00854 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00854 Gene

Function for LINC00854 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00854 Gene

Localization for LINC00854 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00854 Gene

Pathways & Interactions for LINC00854 Gene

SuperPathways for LINC00854 Gene

No Data Available

Interacting Proteins for LINC00854 Gene

Gene Ontology (GO) - Biological Process for LINC00854 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC00854 Gene

Drugs & Compounds for LINC00854 Gene

No Compound Related Data Available

Transcripts for LINC00854 Gene

mRNA/cDNA for LINC00854 Gene

(2) Additional mRNA sequences :
(16) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00854 Gene

Long intergenic non-protein coding RNA 854:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00854 Gene

No ASD Table

Relevant External Links for LINC00854 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC00854 Gene

mRNA expression in normal human tissues for LINC00854 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00854 Gene

This gene is overexpressed in Testis (x21.7).

NURSA nuclear receptor signaling pathways regulating expression of LINC00854 Gene:


SOURCE GeneReport for Unigene cluster for LINC00854 Gene:

genes like me logo Genes that share expression patterns with LINC00854: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC00854 Gene

Orthologs for LINC00854 Gene

Evolution for LINC00854 Gene

Gene Tree for LINC00854 (if available)
Gene Tree for LINC00854 (if available)

No data available for Orthologs for LINC00854 Gene

Paralogs for LINC00854 Gene

No data available for Paralogs for LINC00854 Gene

Variants for LINC00854 Gene

Sequence variations from dbSNP and Humsavar for LINC00854 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1060934 -- 43,230,186(+) CTATG(A/C)GGTAC intron-variant
rs1807433 -- 43,221,879(-) TACCC(C/G)TCTTG intron-variant
rs1133320 -- 43,223,574(-) AACAC(C/T)GGGTA nc-transcript-variant
rs2003781 -- 43,230,211(+) CAGAA(C/G)Ataca intron-variant
rs2086739 -- 43,230,076(-) CCCCG(C/T)TCCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00854 Gene

Variant ID Type Subtype PubMed ID
dgv1466n106 OTHER inversion 24896259
esv2672913 CNV deletion 23128226
esv33998 OTHER inversion 15654335
esv6011 OTHER inversion 19470904
nsv1079031 OTHER inversion 25765185
nsv1146669 OTHER inversion 26484159
nsv1160487 CNV duplication 26073780
nsv510712 CNV deletion 20534489
nsv962328 CNV duplication 23825009

Relevant External Links for LINC00854 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00854 Gene

Disorders for LINC00854 Gene

Relevant External Links for LINC00854

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for LINC00854 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00854 Gene

Publications for LINC00854 Gene

  1. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. (PMID: 22196729) Ulitsky I. … Bartel D.P. (Cell 2011) 2 3 65
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 65

Products for LINC00854 Gene

Sources for LINC00854 Gene

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