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Aliases for LINC00696 Gene

Subcategory (RNA class) for LINC00696 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for LINC00696 Gene

  • Long Intergenic Non-Protein Coding RNA 696 2 3
  • C3orf74 3 4
  • Chromosome 3 Open Reading Frame 74 2

External Ids for LINC00696 Gene

ORGUL Members for LINC00696 Gene

Previous HGNC Symbols for LINC00696 Gene

  • C3orf74

Summaries for LINC00696 Gene

GeneCards Summary for LINC00696 Gene

LINC00696 (Long Intergenic Non-Protein Coding RNA 696) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00696 Gene

Genomics for LINC00696 Gene

Regulatory Elements for LINC00696 Gene

Enhancers for LINC00696 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G052061 1.3 Ensembl ENCODE dbSUPER 0.7 +2.5 2526 2.5 CTCF JUN KLF17 FOSL1 ZNF23 ZFHX2 EED ZMIZ1 FOS IKZF2 GPR62 LINC00696 DUSP7
GH03G052067 1.1 Ensembl ENCODE dbSUPER 0.7 -4.3 -4278 4.7 CTCF NR2F1 REST ZNF623 CBX5 HNF4A FOS FOXP2 KDM1A LINC00696 POC1A
GH03G052086 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -24.5 -24452 6.2 HDGF RB1 ARID4B ZSCAN9 RAD21 EGR1 SCRT2 ZNF143 FOS RELB GPR62 DUSP7 PCBP4 ABHD14B PPM1M GLYCTK LINC00696 POC1A
GH03G052075 1.2 Ensembl ENCODE dbSUPER 0.4 -12.0 -12039 2.6 CTCF RFX1 MAX ZIC2 NR2F2 RARA SCRT2 CEBPA FOXJ2 PRDM10 GPR62 ABHD14B LINC00696 POC1A
GH03G052081 1.2 ENCODE dbSUPER 0.4 -16.2 -16208 0.2 ELF3 HDGF FOXA2 CBX3 ARID4B ZNF48 ZSCAN9 RARA TCF12 GATA4 LINC00696 POC1A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00696 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00696 Gene

Chromosome:
3
Start:
52,062,094 bp from pter
End:
52,065,112 bp from pter
Size:
3,019 bases
Orientation:
Minus strand

Genomic View for LINC00696 Gene

Genes around LINC00696 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00696 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00696 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00696 Gene

Proteins for LINC00696 Gene

  • Protein details for LINC00696 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZRV3-CC074_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00696
    Protein Accession:
    Q6ZRV3

    Protein attributes for LINC00696 Gene

    Size:
    163 amino acids
    Molecular mass:
    16900 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00696 Gene

Post-translational modifications for LINC00696 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00696 Gene

Domains & Families for LINC00696 Gene

Protein Domains for LINC00696 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00696: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00696 Gene

Function for LINC00696 Gene

Phenotypes for LINC00696 Gene

GenomeRNAi human phenotypes for LINC00696:
genes like me logo Genes that share phenotypes with LINC00696: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00696 Gene

Localization for LINC00696 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00696 Gene

Pathways & Interactions for LINC00696 Gene

SuperPathways for LINC00696 Gene

No Data Available

Interacting Proteins for LINC00696 Gene

Gene Ontology (GO) - Biological Process for LINC00696 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00696 Gene

Drugs & Compounds for LINC00696 Gene

No Compound Related Data Available

Transcripts for LINC00696 Gene

mRNA/cDNA for LINC00696 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :

Unigene Clusters for LINC00696 Gene

Long intergenic non-protein coding RNA 696:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00696 Gene

No ASD Table

Relevant External Links for LINC00696 Gene

GeneLoc Exon Structure for
LINC00696
ECgene alternative splicing isoforms for
LINC00696

Expression for LINC00696 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00696 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00696 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x18.5), Skin - Sun Exposed (Lower leg) (x11.4), Minor Salivary Gland (x5.7), and Esophagus - Mucosa (x5.7).

Protein differential expression in normal tissues from HIPED for LINC00696 Gene

This gene is overexpressed in Adipocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC00696 Gene



Protein tissue co-expression partners for LINC00696 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00696 Gene:

LINC00696

SOURCE GeneReport for Unigene cluster for LINC00696 Gene:

Hs.640106
genes like me logo Genes that share expression patterns with LINC00696: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00696 Gene

Orthologs for LINC00696 Gene

No data available for Orthologs and Evolution for LINC00696 Gene

Paralogs for LINC00696 Gene

No data available for Paralogs for LINC00696 Gene

Variants for LINC00696 Gene

Sequence variations from dbSNP and Humsavar for LINC00696 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000057843 -- 52,063,647(+) CCAGC(C/T)CGGGC nc-transcript-variant
rs1000639564 -- 52,067,049(+) AGAGG(A/G)GGCCT upstream-variant-2KB
rs1002082286 -- 52,062,319(+) CTGTG(G/T)CTTCT nc-transcript-variant
rs1002270046 -- 52,064,142(+) GGGCG(-/AC)ACAAA nc-transcript-variant
rs1002638338 -- 52,065,775(+) CTGGG(A/C)CCCTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LINC00696 Gene

Variant ID Type Subtype PubMed ID
dgv8325n54 CNV loss 21841781
nsv1003453 CNV gain 25217958
nsv508923 CNV insertion 20534489
nsv519445 CNV gain+loss 19592680
nsv520211 CNV gain 19592680
nsv590282 CNV gain 21841781
nsv590300 CNV gain 21841781

Variation tolerance for LINC00696 Gene

Gene Damage Index Score: 0.11; 2.47% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC00696 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00696

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC00696 Gene

Disorders for LINC00696 Gene

Relevant External Links for LINC00696

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00696

No disorders were found for LINC00696 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00696 Gene

Publications for LINC00696 Gene

  1. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64

Products for LINC00696 Gene

Sources for LINC00696 Gene

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