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Aliases for LINC00687 Gene

Subcategory (RNA class) for LINC00687 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00687 Gene

  • Long Intergenic Non-Protein Coding RNA 687 2 3 5
  • Chromosome 20 Open Reading Frame 61 2
  • DJ1012F16.1 3
  • C20orf61 3

External Ids for LINC00687 Gene

Previous HGNC Symbols for LINC00687 Gene

  • C20orf61

Summaries for LINC00687 Gene

GeneCards Summary for LINC00687 Gene

LINC00687 (Long Intergenic Non-Protein Coding RNA 687) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00687 Gene

Genomics for LINC00687 Gene

Regulatory Elements for LINC00687 Gene

Enhancers for LINC00687 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F011900 1.1 Ensembl ENCODE 11 -31.0 -30983 1.9 SOX13 ZNF146 PKNOX1 INSM2 FEZF1 ZNF384 ZIC2 TEAD3 ZNF664 CTBP1 LINC00687 ENSG00000236526 BTBD3
GH20F011791 0.9 ENCODE 11.5 +78.2 78158 3.2 TBP PKNOX1 ZFP64 INSM2 KLF17 FEZF1 RAD21 ZNF366 ZNF391 CREM LINC00687 ENSG00000236526 RN7SKP111 LOC105372530
GH20F011715 0.8 Ensembl ENCODE 10.4 +154.1 154090 1.4 CTCF PKNOX1 BHLHE40 SMC3 RAD21 MAFK NFE2L2 LINC00687 LOC105372530 ENSG00000261411
GH20F011794 0.6 ENCODE 11.5 +74.3 74269 3.9 TBP PKNOX1 HLF BHLHE40 CEBPB FEZF1 EP300 CEBPA STAT3 LINC00687 ENSG00000236526 RN7SKP111 LOC105372530
GH20F011814 0.5 ENCODE 11.7 +56.3 56275 0.2 BHLHE40 CEBPB FOS LINC00687 RN7SKP111 LOC105372530
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00687 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00687 Gene

Chromosome:
20
Start:
11,800,463 bp from pter
End:
11,870,715 bp from pter
Size:
70,253 bases
Orientation:
Minus strand

Genomic View for LINC00687 Gene

Genes around LINC00687 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00687 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00687 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00687 Gene

Proteins for LINC00687 Gene

Post-translational modifications for LINC00687 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00687 Gene

Domains & Families for LINC00687 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00687 Gene

Function for LINC00687 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00687 Gene

Localization for LINC00687 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00687 Gene

Pathways & Interactions for LINC00687 Gene

SuperPathways for LINC00687 Gene

No Data Available

Interacting Proteins for LINC00687 Gene

Gene Ontology (GO) - Biological Process for LINC00687 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00687 Gene

Transcripts for LINC00687 Gene

mRNA/cDNA for LINC00687 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00687 Gene

Long intergenic non-protein coding RNA 687:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00687 Gene

No ASD Table

Relevant External Links for LINC00687 Gene

GeneLoc Exon Structure for
LINC00687
ECgene alternative splicing isoforms for
LINC00687

Expression for LINC00687 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00687 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00687 Gene

This gene is overexpressed in Testis (x52.8).

NURSA nuclear receptor signaling pathways regulating expression of LINC00687 Gene:

LINC00687

SOURCE GeneReport for Unigene cluster for LINC00687 Gene:

Hs.560990
genes like me logo Genes that share expression patterns with LINC00687: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC00687 Gene

Orthologs for LINC00687 Gene

Evolution for LINC00687 Gene

ENSEMBL:
Gene Tree for LINC00687 (if available)
TreeFam:
Gene Tree for LINC00687 (if available)

No data available for Orthologs for LINC00687 Gene

Paralogs for LINC00687 Gene

No data available for Paralogs for LINC00687 Gene

Variants for LINC00687 Gene

Sequence variations from dbSNP and Humsavar for LINC00687 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs10211738 -- 11,818,632(+) tgtat(C/G)tacat intron-variant
rs1080583 -- 11,832,906(+) GCCTC(A/G)AGCAG intron-variant
rs111228911 -- 11,856,102(+) AATTT(A/G)AGGAG intron-variant
rs111229358 -- 11,819,998(+) TGTCT(A/C)AACAA intron-variant
rs111244606 -- 11,815,786(+) TGCAG(A/C)CTTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00687 Gene

Variant ID Type Subtype PubMed ID
dgv168e55 CNV gain 17911159
esv2758782 CNV gain 17122850
esv3645231 CNV gain 21293372
esv3645232 CNV gain 21293372
nsv1058532 CNV gain 25217958
nsv7339 OTHER inversion 18451855
nsv9785 CNV gain 18304495

Relevant External Links for LINC00687 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00687

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00687 Gene

Disorders for LINC00687 Gene

Relevant External Links for LINC00687

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00687

No disorders were found for LINC00687 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00687 Gene

Publications for LINC00687 Gene

  1. Transcriptomic and genetic studies identify IL-33 as a candidate gene for Alzheimer's disease. (PMID: 19204726) Chapuis J. … Lambert J.C. (Mol. Psychiatry 2009) 3 64
  2. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 64

Products for LINC00687 Gene

Sources for LINC00687 Gene

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