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Aliases for LINC00687 Gene

Subcategory (RNA class) for LINC00687 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for LINC00687 Gene

  • Long Intergenic Non-Protein Coding RNA 687 2 3
  • Chromosome 20 Open Reading Frame 61 2
  • DJ1012F16.1 3
  • C20orf61 3

External Ids for LINC00687 Gene

Previous Symbols for LINC00687 Gene

  • C20orf61

Summaries for LINC00687 Gene

GeneCards Summary for LINC00687 Gene

LINC00687 (Long Intergenic Non-Protein Coding RNA 687) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00687 Gene

Genomics for LINC00687 Gene

Genomic Location for LINC00687 Gene

Start:
11,800,463 bp from pter
End:
11,872,015 bp from pter
Size:
71,553 bases
Orientation:
Minus strand

Genomic View for LINC00687 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC00687 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00687 Gene

No data available for Regulatory Elements for LINC00687 Gene

Proteins for LINC00687 Gene

Post-translational modifications for LINC00687 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00687 Gene

Domains for LINC00687 Gene

Gene Families for LINC00687 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with LINC00687: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for LINC00687 Gene

Function for LINC00687 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC00687 Gene

Localization for LINC00687 Gene

No data available for Gene Ontology (GO) - Cellular Components for LINC00687 Gene

Pathways for LINC00687 Gene

SuperPathways for LINC00687 Gene

No Data Available

Interacting Proteins for LINC00687 Gene

Gene Ontology (GO) - Biological Process for LINC00687 Gene

None

No data available for Pathways by source for LINC00687 Gene

Transcripts for LINC00687 Gene

mRNA/cDNA for LINC00687 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00687 Gene

Long intergenic non-protein coding RNA 687:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00687 Gene

No ASD Table

Relevant External Links for LINC00687 Gene

GeneLoc Exon Structure for
LINC00687
ECgene alternative splicing isoforms for
LINC00687

Expression for LINC00687 Gene

mRNA expression in normal human tissues for LINC00687 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00687 Gene

This gene is overexpressed in Testis (52.8).

SOURCE GeneReport for Unigene cluster for LINC00687 Gene Hs.560990

genes like me logo Genes that share expressions with LINC00687: view

Orthologs for LINC00687 Gene

Evolution for LINC00687 Gene

ENSEMBL:
Gene Tree for LINC00687 (if available)
TreeFam:
Gene Tree for LINC00687 (if available)

No data available for Orthologs for LINC00687 Gene

Paralogs for LINC00687 Gene

No data available for Paralogs for LINC00687 Gene

Variants for LINC00687 Gene

Sequence variations from dbSNP and Humsavar for LINC00687 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs743007 -- 11,827,967(+) ttgtt(A/G)tagaa intron-variant
rs743008 -- 11,827,903(+) ctcag(A/C)cttca intron-variant
rs803657 -- 11,813,855(-) ctgct(A/G)taaca intron-variant
rs803658 -- 11,813,703(-) ttctg(A/G)tggtt intron-variant
rs803659 -- 11,813,366(-) AAGGA(C/T)CTATA intron-variant

Relevant External Links for LINC00687 Gene

HapMap Linkage Disequilibrium report
LINC00687

No data available for Structural Variations from Database of Genomic Variants (DGV) for LINC00687 Gene

Disorders for LINC00687 Gene

No disorders were found for LINC00687 Gene.

No data available for UniProtKB/Swiss-Prot for LINC00687 Gene

Publications for LINC00687 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3
  2. Transcriptomic and genetic studies identify IL-33 as a candidate gene for Alzheimer's disease. (PMID: 19204726) Chapuis J. … Lambert J.C. (Mol. Psychiatry 2009) 3

Products for LINC00687 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC00687
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC00687
    • Block miRNA regulation of LINC00687 using miScript Target Protectors

    Sources for LINC00687 Gene

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