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Aliases for LINC00686 Gene

Subcategory (RNA class) for LINC00686 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00686 Gene

  • Long Intergenic Non-Protein Coding RNA 686 2 3 5
  • Chromosome 20 Open Reading Frame 90 2
  • C20orf90 3

External Ids for LINC00686 Gene

Previous HGNC Symbols for LINC00686 Gene

  • C20orf90

Previous GeneCards Identifiers for LINC00686 Gene

  • GC20M061327

Summaries for LINC00686 Gene

GeneCards Summary for LINC00686 Gene

LINC00686 (Long Intergenic Non-Protein Coding RNA 686) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00686 Gene

Genomics for LINC00686 Gene

Regulatory Elements for LINC00686 Gene

Enhancers for LINC00686 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G062738 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -40.2 -40204 4.9 PKNOX1 ATF1 SIN3A ZNF766 GLIS2 GATA2 ELK1 FOS JUNB MIER2 OGFR NTSR1 LINC00659 LINC00686 OGFR-AS1 C20orf166-AS1 MIR1-1 MIR1-1HG ENSG00000229882 ENSG00000232121
GH20G062666 1.3 ENCODE dbSUPER 12.4 +33.2 33203 2.3 PKNOX1 FOXA2 ATF1 MLX ARID4B SIN3A DMAP1 FEZF1 ZNF48 ZNF143 LINC00686 NTSR1 ENSG00000223669 SLCO4A1-AS1
GH20G062668 1.2 ENCODE dbSUPER 12.4 +31.8 31797 0.2 PKNOX1 MLX ARID4B SIN3A FEZF1 GLIS2 ZNF143 ZHX2 MIER2 REST LINC00686 NTSR1 ENSG00000223669 SLCO4A1-AS1
GH20G062785 0.7 ENCODE dbSUPER 11.3 -85.8 -85827 1.0 ZFHX2 IKZF1 ZNF398 NTSR1 LINC00686 MRGBP LOC105372716 LINC00659
GH20G062760 0.4 ENCODE 11.9 -60.4 -60371 0.6 AGO1 NFE2 NTSR1 LINC00686 ENSG00000223669 GC20M062750 GC20P062801
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00686 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00686 Gene

Chromosome:
20
Start:
62,695,024 bp from pter
End:
62,700,480 bp from pter
Size:
5,457 bases
Orientation:
Minus strand

Genomic View for LINC00686 Gene

Genes around LINC00686 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00686 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00686 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LINC00686 Gene

Proteins for LINC00686 Gene

Post-translational modifications for LINC00686 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00686 Gene

Domains & Families for LINC00686 Gene

Suggested Antigen Peptide Sequences for LINC00686 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for LINC00686 Gene

Function for LINC00686 Gene

Phenotypes for LINC00686 Gene

GenomeRNAi human phenotypes for LINC00686:
genes like me logo Genes that share phenotypes with LINC00686: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00686 Gene

Localization for LINC00686 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00686 Gene

Pathways & Interactions for LINC00686 Gene

SuperPathways for LINC00686 Gene

No Data Available

Interacting Proteins for LINC00686 Gene

Gene Ontology (GO) - Biological Process for LINC00686 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00686 Gene

Drugs & Compounds for LINC00686 Gene

No Compound Related Data Available

Transcripts for LINC00686 Gene

mRNA/cDNA for LINC00686 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00686 Gene

No ASD Table

Relevant External Links for LINC00686 Gene

GeneLoc Exon Structure for
LINC00686
ECgene alternative splicing isoforms for
LINC00686

Expression for LINC00686 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00686 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00686 Gene:

LINC00686
genes like me logo Genes that share expression patterns with LINC00686: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00686 Gene

Orthologs for LINC00686 Gene

Evolution for LINC00686 Gene

ENSEMBL:
Gene Tree for LINC00686 (if available)
TreeFam:
Gene Tree for LINC00686 (if available)

No data available for Orthologs for LINC00686 Gene

Paralogs for LINC00686 Gene

No data available for Paralogs for LINC00686 Gene

Variants for LINC00686 Gene

Relevant External Links for LINC00686 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00686

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00686 Gene

Disorders for LINC00686 Gene

No disorders were found for LINC00686 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC00686 Gene

Publications for LINC00686 Gene

No publications were found for LINC00686 Gene.

Products for LINC00686 Gene

Sources for LINC00686 Gene

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