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Aliases for LINC00677 Gene

Subcategory (RNA class) for LINC00677 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00677 Gene

  • Long Intergenic Non-Protein Coding RNA 677 2 3 5
  • Chromosome 14 Open Reading Frame 74 2
  • C14orf74 3

External Ids for LINC00677 Gene

Previous HGNC Symbols for LINC00677 Gene

  • C14orf74

Previous GeneCards Identifiers for LINC00677 Gene

  • GC14M103589

Summaries for LINC00677 Gene

GeneCards Summary for LINC00677 Gene

LINC00677 (Long Intergenic Non-Protein Coding RNA 677) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00677 Gene

Genomics for LINC00677 Gene

Regulatory Elements for LINC00677 Gene

Enhancers for LINC00677 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F103117 1.4 FANTOM5 ENCODE 0.8 +1.3 1256 9.0 HDGF ATF1 PKNOX1 ARID4B SIN3A ZNF121 GLIS2 FOS KDM4B SP3 TNFAIP2 ENSG00000259444 TRAF3 EIF5 MARK3 BAG5 LINC00677
GH14F103126 1.2 Ensembl ENCODE 0.4 -6.0 -5989 5.0 ELF3 HDGF PKNOX1 ARID4B KLF17 SIN3A RAD21 GLIS2 ZNF366 SCRT2 NDUFB4P11 PIR35194 LINC00677
GH14F103127 0.5 ENCODE 0.8 -3.5 -3474 0.0 E2F1 POLR2A SIN3A MLLT1 LINC00677 PIR35194
GH14F103128 0.5 ENCODE 0.8 -3.4 -3354 0.2 E2F1 KLF1 POLR2A LINC00677 PIR35194
GH14F103131 0.8 ENCODE 0.4 -9.0 -8998 0.8 ELF3 SAP130 THRB ZNF48 ZIC2 RARA POLR2A NR2F6 MIXL1 THAP11 NDUFB4P11 PIR35194 LINC00677
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00677 on UCSC Golden Path with GeneCards custom track

Promoters for LINC00677 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000652762 -95 2201 ATF1 PKNOX1 SIN3A KDM4B SP5 SMARCB1 ZNF518A SMARCA4 PBX2 GLIS1

Genomic Location for LINC00677 Gene

Chromosome:
14
Start:
103,120,847 bp from pter
End:
103,123,405 bp from pter
Size:
2,559 bases
Orientation:
Minus strand

Genomic View for LINC00677 Gene

Genes around LINC00677 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00677 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00677 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00677 Gene

Proteins for LINC00677 Gene

Post-translational modifications for LINC00677 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00677 Gene

Domains & Families for LINC00677 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00677 Gene

Function for LINC00677 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00677 Gene

Localization for LINC00677 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00677 Gene

Pathways & Interactions for LINC00677 Gene

SuperPathways for LINC00677 Gene

No Data Available

Interacting Proteins for LINC00677 Gene

Gene Ontology (GO) - Biological Process for LINC00677 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00677 Gene

Transcripts for LINC00677 Gene

mRNA/cDNA for LINC00677 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00677 Gene

No ASD Table

Relevant External Links for LINC00677 Gene

GeneLoc Exon Structure for
LINC00677
ECgene alternative splicing isoforms for
LINC00677

Expression for LINC00677 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00677 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00677 Gene

This gene is overexpressed in Testis (x22.3).

NURSA nuclear receptor signaling pathways regulating expression of LINC00677 Gene:

LINC00677
genes like me logo Genes that share expression patterns with LINC00677: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC00677 Gene

Orthologs for LINC00677 Gene

Evolution for LINC00677 Gene

ENSEMBL:
Gene Tree for LINC00677 (if available)
TreeFam:
Gene Tree for LINC00677 (if available)

No data available for Orthologs for LINC00677 Gene

Paralogs for LINC00677 Gene

No data available for Paralogs for LINC00677 Gene

Variants for LINC00677 Gene

Sequence variations from dbSNP and Humsavar for LINC00677 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs10130208 -- 103,120,920(+) atggc(A/G)gttgc nc-transcript-variant, upstream-variant-2KB
rs10130294 -- 103,120,979(+) tttcc(A/G)ttttg nc-transcript-variant, upstream-variant-2KB
rs10136760 -- 103,123,076(+) TCTCC(A/C)GCAGC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs10136924 -- 103,123,119(+) AGCGC(A/G)CCCCA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs111496738 -- 103,121,721(+) CTGCC(A/G)TCAGT intron-variant, upstream-variant-2KB

Relevant External Links for LINC00677 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00677

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00677 Gene

Disorders for LINC00677 Gene

Relevant External Links for LINC00677

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00677

No disorders were found for LINC00677 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00677 Gene

Publications for LINC00677 Gene

No publications were found for LINC00677 Gene.

Products for LINC00677 Gene

Sources for LINC00677 Gene

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