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Aliases for LINC00652 Gene

Subcategory (RNA class) for LINC00652 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00652 Gene

  • Long Intergenic Non-Protein Coding RNA 652 2 3
  • HSPC072 3

External Ids for LINC00652 Gene

Summaries for LINC00652 Gene

GeneCards Summary for LINC00652 Gene

LINC00652 (Long Intergenic Non-Protein Coding RNA 652) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00652 Gene

Genomics for LINC00652 Gene

Genomic Location for LINC00652 Gene

Chromosome:
20
Start:
18,786,065 bp from pter
End:
18,794,584 bp from pter
Size:
8,520 bases
Orientation:
Minus strand

Genomic View for LINC00652 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for LINC00652 Gene

No data available for Regulatory Elements for LINC00652 Gene

Proteins for LINC00652 Gene

Post-translational modifications for LINC00652 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00652 Gene

Domains & Families for LINC00652 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00652 Gene

Function for LINC00652 Gene

genes like me logo Genes that share phenotypes with LINC00652: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00652 Gene

Localization for LINC00652 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00652 Gene

Pathways & Interactions for LINC00652 Gene

SuperPathways for LINC00652 Gene

No Data Available

Interacting Proteins for LINC00652 Gene

Gene Ontology (GO) - Biological Process for LINC00652 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00652 Gene

Drugs & Compounds for LINC00652 Gene

No Compound Related Data Available

Transcripts for LINC00652 Gene

mRNA/cDNA for LINC00652 Gene

Unigene Clusters for LINC00652 Gene

Long intergenic non-protein coding RNA 652:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00652 Gene

No ASD Table

Relevant External Links for LINC00652 Gene

GeneLoc Exon Structure for
LINC00652
ECgene alternative splicing isoforms for
LINC00652

Expression for LINC00652 Gene

mRNA expression in normal human tissues for LINC00652 Gene

SOURCE GeneReport for Unigene cluster for LINC00652 Gene Hs.584899

genes like me logo Genes that share expression patterns with LINC00652: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LINC00652 Gene

Orthologs for LINC00652 Gene

Evolution for LINC00652 Gene

ENSEMBL:
Gene Tree for LINC00652 (if available)
TreeFam:
Gene Tree for LINC00652 (if available)

No data available for Orthologs for LINC00652 Gene

Paralogs for LINC00652 Gene

No data available for Paralogs for LINC00652 Gene

Variants for LINC00652 Gene

Sequence variations from dbSNP and Humsavar for LINC00652 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs563865979 -- 18,789,696(+) GCAGA(G/T)CAGGT nc-transcript-variant
rs562147964 -- 18,791,421(+) GAAAC(C/G)GAGAA intron-variant
rs561736996 -- 18,788,455(+) TCATA(C/T)AATAA nc-transcript-variant
rs559718780 -- 18,789,560(+) TTAAA(C/T)ATCAA intron-variant
rs558909086 -- 18,791,847(+) CCAGC(C/T)CCAGA intron-variant

Relevant External Links for LINC00652 Gene

HapMap Linkage Disequilibrium report
LINC00652

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00652 Gene

Disorders for LINC00652 Gene

Relevant External Links for LINC00652

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00652
genes like me logo Genes that share disorders with LINC00652: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00652 Gene

Publications for LINC00652 Gene

  1. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 2 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 67
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

Products for LINC00652 Gene

Sources for LINC00652 Gene

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