Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC00634 Gene

Subcategory (RNA class) for LINC00634 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00634 Gene

  • Long Intergenic Non-Protein Coding RNA 634 2 3 5
  • BK250D10.8 3

External Ids for LINC00634 Gene

Previous GeneCards Identifiers for LINC00634 Gene

  • GC22P042352

Summaries for LINC00634 Gene

GeneCards Summary for LINC00634 Gene

LINC00634 (Long Intergenic Non-Protein Coding RNA 634) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00634 Gene

Genomics for LINC00634 Gene

Regulatory Elements for LINC00634 Gene

Enhancers for LINC00634 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F042021 0.8 Ensembl ENCODE 7.3 +70.1 70127 2.4 KLF1 ZIC2 ZFHX2 FOXK2 POLR2A EED CREM ZBTB20 EGR2 ZNF263 SMDT1 CYP2D6 WBP2NL SLC25A5P1 SEPT3 NAGA FAM109B TCF20 LINC00634 NDUFA6-AS1
GH22F042201 0.6 Ensembl ENCODE 6.5 +250.4 250428 1.7 CYP2D6 SMDT1 LINC00634 FAM109B ENSG00000227370 PIR32029 CYP2D8P
GH22F041951 0.9 Ensembl ENCODE 0.8 0.0 -24 0.5 CTCF PKNOX1 RFX1 MAX BMI1 EBF1 RAD21 HIC1 RAD51 ZFHX2 SMDT1 CENPM LINC00634
GH22F041949 1.1 FANTOM5 Ensembl ENCODE 0.8 -2.4 -2417 1.2 HDGF TBP ESRRA ZMYM3 YBX1 EBF1 ZIC2 RELA GLIS2 POLR2A WBP2NL CYP2D6 SNU13 CENPM LINC00634
GH22F041952 0.2 ENCODE 0.8 -0.8 -834 0.2 CTCF ARID4B EBF1 ZIC2 ZFHX2 PATZ1 EED PRDM10 EGR2 ZNF263 WBP2NL CENPM LINC00634
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LINC00634 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00634 Gene

Chromosome:
22
Start:
41,952,165 bp from pter
End:
41,958,942 bp from pter
Size:
6,778 bases
Orientation:
Plus strand

Genomic View for LINC00634 Gene

Genes around LINC00634 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00634 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00634 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00634 Gene

Proteins for LINC00634 Gene

Post-translational modifications for LINC00634 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00634 Gene

Domains & Families for LINC00634 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00634 Gene

Function for LINC00634 Gene

Phenotypes for LINC00634 Gene

GenomeRNAi human phenotypes for LINC00634:
genes like me logo Genes that share phenotypes with LINC00634: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00634 Gene

Localization for LINC00634 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00634 Gene

Pathways & Interactions for LINC00634 Gene

SuperPathways for LINC00634 Gene

No Data Available

Interacting Proteins for LINC00634 Gene

Gene Ontology (GO) - Biological Process for LINC00634 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00634 Gene

Transcripts for LINC00634 Gene

mRNA/cDNA for LINC00634 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00634 Gene

Long intergenic non-protein coding RNA 634:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00634 Gene

No ASD Table

Relevant External Links for LINC00634 Gene

GeneLoc Exon Structure for
LINC00634
ECgene alternative splicing isoforms for
LINC00634

Expression for LINC00634 Gene

mRNA expression in normal human tissues for LINC00634 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00634 Gene

This gene is overexpressed in Brain - Hippocampus (x6.4), Brain - Putamen (basal ganglia) (x6.1), Brain - Nucleus accumbens (basal ganglia) (x6.0), Brain - Caudate (basal ganglia) (x5.5), Brain - Amygdala (x5.1), Brain - Cortex (x4.9), Brain - Anterior cingulate cortex (BA24) (x4.8), and Brain - Frontal Cortex (BA9) (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of LINC00634 Gene:

LINC00634

SOURCE GeneReport for Unigene cluster for LINC00634 Gene:

Hs.517656
genes like me logo Genes that share expression patterns with LINC00634: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC00634 Gene

Orthologs for LINC00634 Gene

Evolution for LINC00634 Gene

ENSEMBL:
Gene Tree for LINC00634 (if available)
TreeFam:
Gene Tree for LINC00634 (if available)

No data available for Orthologs for LINC00634 Gene

Paralogs for LINC00634 Gene

No data available for Paralogs for LINC00634 Gene

Variants for LINC00634 Gene

Sequence variations from dbSNP and Humsavar for LINC00634 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs10681746 -- 41,955,825(+) AAAAA(-/A)TTCAA intron-variant
rs10699288 -- 41,957,208(+) TTTTT(-/TT)CCTGA intron-variant
rs112458483 -- 41,959,419(+) GTGGG(A/G)GAATT downstream-variant-500B
rs112565003 -- 41,954,456(+) CTGCC(G/T)TGGCC intron-variant
rs112682927 -- 41,956,021(+) TTCCC(-/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00634 Gene

Variant ID Type Subtype PubMed ID
esv3647806 CNV loss 21293372
nsv1057208 CNV gain 25217958
nsv1139067 CNV deletion 24896259
nsv508736 CNV insertion 20534489

Relevant External Links for LINC00634 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00634

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00634 Gene

Disorders for LINC00634 Gene

Relevant External Links for LINC00634

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00634

No disorders were found for LINC00634 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00634 Gene

Publications for LINC00634 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 64

Products for LINC00634 Gene

Sources for LINC00634 Gene

Content
Loading form....