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Aliases for LINC00624 Gene

Subcategory (RNA class) for LINC00624 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00624 Gene

  • Long Intergenic Non-Protein Coding RNA 624 2 3 5

External Ids for LINC00624 Gene

Previous GeneCards Identifiers for LINC00624 Gene

  • GC01M146854

Summaries for LINC00624 Gene

GeneCards Summary for LINC00624 Gene

LINC00624 (Long Intergenic Non-Protein Coding RNA 624) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00624 Gene

Genomics for LINC00624 Gene

Regulatory Elements for LINC00624 Gene

Enhancers for LINC00624 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G147515 0.9 ENCODE 0.7 +1.7 1709 1.3 ELF3 FOXA2 ZSCAN4 ARID4B SIN3A RAD21 RFX5 SCRT2 FOS RCOR1 BCL9 ENSG00000234190 GJA5 GJA8 ENSG00000237188 LINC00624 PIR38166
GH01G147504 1 Ensembl ENCODE 0.4 +12.9 12896 1.7 CTCF TAL1 TEAD4 RBBP5 RAD21 ZIC2 ZKSCAN1 E2F1 ZFHX2 ELK1 BCL9 NBPF13P CHD1L RNU1-122P ENSG00000237188 PIR38166 LINC00624
GH01G147538 1.1 ENCODE 0.3 -23.1 -23136 5.8 PKNOX1 FOXA2 ARNT SIN3A FEZF1 ZNF2 YY1 ZNF302 ZNF416 ZNF548 LOC647481 BCL9 LOC101927468 ACP6 ENSG00000227700 PDIA3P1 ENSG00000237188 LINC00624
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00624 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00624 Gene

Chromosome:
1
Start:
147,258,885 bp from pter
End:
147,517,875 bp from pter
Size:
258,991 bases
Orientation:
Minus strand

Genomic View for LINC00624 Gene

Genes around LINC00624 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00624 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00624 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00624 Gene

Proteins for LINC00624 Gene

Post-translational modifications for LINC00624 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00624 Gene

Domains & Families for LINC00624 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00624 Gene

Function for LINC00624 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00624 Gene

Localization for LINC00624 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00624 Gene

Pathways & Interactions for LINC00624 Gene

SuperPathways for LINC00624 Gene

No Data Available

Interacting Proteins for LINC00624 Gene

Gene Ontology (GO) - Biological Process for LINC00624 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00624 Gene

Drugs & Compounds for LINC00624 Gene

No Compound Related Data Available

Transcripts for LINC00624 Gene

mRNA/cDNA for LINC00624 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00624 Gene

Long intergenic non-protein coding RNA 624:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00624 Gene

No ASD Table

Relevant External Links for LINC00624 Gene

GeneLoc Exon Structure for
LINC00624
ECgene alternative splicing isoforms for
LINC00624

Expression for LINC00624 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00624 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00624 Gene

This gene is overexpressed in Testis (x41.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC00624 Gene:

LINC00624

SOURCE GeneReport for Unigene cluster for LINC00624 Gene:

Hs.323484
genes like me logo Genes that share expression patterns with LINC00624: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00624 Gene

Orthologs for LINC00624 Gene

Evolution for LINC00624 Gene

ENSEMBL:
Gene Tree for LINC00624 (if available)
TreeFam:
Gene Tree for LINC00624 (if available)

No data available for Orthologs for LINC00624 Gene

Paralogs for LINC00624 Gene

No data available for Paralogs for LINC00624 Gene

Variants for LINC00624 Gene

Sequence variations from dbSNP and Humsavar for LINC00624 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000014663 -- 147,394,883(+) CTATA(C/T)AACTT intron-variant
rs1000083889 -- 147,477,293(+) TGAGT(A/G)CCAAT intron-variant
rs1000102407 -- 147,442,796(+) ACAAA(C/T)GGAAG intron-variant
rs1000151725 -- 147,453,199(+) AGAGA(A/G)ATTGT intron-variant
rs1000171300 -- 147,490,050(+) AATTA(G/T)TGTAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00624 Gene

Variant ID Type Subtype PubMed ID
dgv182n106 CNV insertion 24896259
dgv207e59 CNV tandem duplication 20981092
dgv327n100 CNV gain 25217958
dgv335n100 CNV loss 25217958
dgv66e199 CNV deletion 23128226
esv1706389 CNV deletion 17803354
esv2671455 CNV deletion 23128226
esv2761299 CNV gain+loss 21179565
esv2764179 CNV loss 21179565
esv3343492 CNV duplication 20981092
esv3578151 CNV loss 25503493
esv3584596 CNV loss 24956385
esv3587438 CNV loss 21293372
esv3587439 CNV loss 21293372
esv3587440 CNV loss 21293372
nsv1003688 CNV gain 25217958
nsv1005055 CNV loss 25217958
nsv1009728 CNV loss 25217958
nsv1077661 CNV deletion 25765185
nsv1120197 CNV tandem duplication 24896259
nsv1129134 CNV insertion 24896259
nsv1132304 CNV duplication 24896259
nsv1136033 CNV deletion 24896259
nsv1140421 CNV tandem duplication 24896259
nsv159275 CNV insertion 16902084
nsv474307 CNV novel sequence insertion 20440878
nsv509457 CNV insertion 20534489
nsv510962 OTHER complex 20534489
nsv547676 CNV gain 21841781
nsv831414 CNV gain 17160897
nsv998093 CNV loss 25217958

Relevant External Links for LINC00624 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00624

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00624 Gene

Disorders for LINC00624 Gene

Relevant External Links for LINC00624

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00624

No disorders were found for LINC00624 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00624 Gene

Publications for LINC00624 Gene

  1. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X. … Seielstad M. (PLoS ONE 2013) 3 64
  2. A genome-wide association study identifies protein quantitative trait loci (pQTLs). (PMID: 18464913) Melzer D. … Ferrucci L. (PLoS Genet. 2008) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC00624 Gene

Sources for LINC00624 Gene

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