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Aliases for LINC00612 Gene

Subcategory (RNA class) for LINC00612 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00612 Gene

  • Long Intergenic Non-Protein Coding RNA 612 2 3 5
  • C12orf33 3 4
  • Chromosome 12 Open Reading Frame 33 2

External Ids for LINC00612 Gene

Previous HGNC Symbols for LINC00612 Gene

  • C12orf33

Previous GeneCards Identifiers for LINC00612 Gene

  • GC12M009209

Summaries for LINC00612 Gene

GeneCards Summary for LINC00612 Gene

LINC00612 (Long Intergenic Non-Protein Coding RNA 612) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00612 Gene

Genomics for LINC00612 Gene

Regulatory Elements for LINC00612 Gene

Enhancers for LINC00612 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F009677 0.2 Ensembl 19.4 -612.9 -612931 0.8 OSR2 ZNF639 BCL11A RNF2 GFI1B FEZF1 WT1 ZNF264 LINC00612 DDX12P LOC642846 LOC255308 M6PR ENSG00000255753 ENSG00000213443 ENSG00000257027 GC12M011542 CLEC2D
GH12F009829 0.3 FANTOM5 19.4 -765.0 -764984 0.3 ZNF639 RNF2 GFI1B FEZF1 ZNF264 OSR2 BCL11A WT1 TCF7L2 KLRF1 KLRD1 LINC00612 DDX12P LOC642846 LOC255308 M6PR ENSG00000255753 ENSG00000213443 LOC400002
GH12F008617 1.3 FANTOM5 Ensembl ENCODE 12.8 +446.2 446177 2.7 PKNOX1 TAL1 JUN BMI1 ZBTB40 GTF3C2 MTA2 TRIM22 CEBPB JUNB CLEC4E LOC642846 DDX12P M6PR LINC00612 ENSG00000255753 A2ML1 A2ML1-AS2 CLEC6A CLEC4A
GH12F008947 1.2 FANTOM5 ENCODE 12.4 +112.9 112857 8.7 CREB3L1 ARID4B SIN3A YBX1 FEZF1 DMAP1 ZNF2 YY1 ZNF207 ZNF143 M6PR KLRG1 PHC1 LINC00612 LOC642846 DDX12P ENSG00000257105
GH12F009750 0.5 Ensembl ENCODE 10.1 -686.8 -686782 2.9 CBX3 ARNT BMI1 ZNF2 RAD21 RFX5 CHAMP1 ZNF143 ZNF207 ETV6 LOC255308 CLECL1 CLEC7A M6PR LINC00612 LOC642846 ENSG00000213443 ENSG00000257027 KLRA1P LOC374443
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LINC00612 on UCSC Golden Path with GeneCards custom track

Promoters for LINC00612 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000426113 170 1801 ZFP64 ARID4B SIN3A DMAP1 ZNF48 ZNF2 YY1 GLIS2 FOS PAF1

Genomic Location for LINC00612 Gene

Chromosome:
12
Start:
9,055,586 bp from pter
End:
9,065,070 bp from pter
Size:
9,485 bases
Orientation:
Minus strand

Genomic View for LINC00612 Gene

Genes around LINC00612 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00612 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00612 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00612 Gene

Proteins for LINC00612 Gene

  • Protein details for LINC00612 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N6U2-CL033_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00612
    Protein Accession:
    Q8N6U2
    Secondary Accessions:
    • B3KW01

    Protein attributes for LINC00612 Gene

    Size:
    182 amino acids
    Molecular mass:
    18370 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00612 Gene

Post-translational modifications for LINC00612 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00612 Gene

Domains & Families for LINC00612 Gene

Protein Domains for LINC00612 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00612: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00612 Gene

Function for LINC00612 Gene

Phenotypes for LINC00612 Gene

GenomeRNAi human phenotypes for LINC00612:
genes like me logo Genes that share phenotypes with LINC00612: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00612 Gene

Localization for LINC00612 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00612 Gene

Pathways & Interactions for LINC00612 Gene

SuperPathways for LINC00612 Gene

No Data Available

Interacting Proteins for LINC00612 Gene

Gene Ontology (GO) - Biological Process for LINC00612 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00612 Gene

Transcripts for LINC00612 Gene

mRNA/cDNA for LINC00612 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00612 Gene

Long intergenic non-protein coding RNA 612:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00612 Gene

No ASD Table

Relevant External Links for LINC00612 Gene

GeneLoc Exon Structure for
LINC00612
ECgene alternative splicing isoforms for
LINC00612

Expression for LINC00612 Gene

mRNA expression in normal human tissues for LINC00612 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00612 Gene:

LINC00612

SOURCE GeneReport for Unigene cluster for LINC00612 Gene:

Hs.408739
genes like me logo Genes that share expression patterns with LINC00612: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC00612 Gene

Orthologs for LINC00612 Gene

Evolution for LINC00612 Gene

ENSEMBL:
Gene Tree for LINC00612 (if available)
TreeFam:
Gene Tree for LINC00612 (if available)

No data available for Orthologs for LINC00612 Gene

Paralogs for LINC00612 Gene

No data available for Paralogs for LINC00612 Gene

Variants for LINC00612 Gene

Sequence variations from dbSNP and Humsavar for LINC00612 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10771307 -- 9,065,605(+) GACTT(G/T)CAGGC intron-variant, upstream-variant-2KB
rs10771308 -- 9,065,977(+) TCTCC(G/T)TTCTG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs10771309 -- 9,066,010(+) GACAC(A/C)CTTGC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs10842789 -- 9,057,603(+) TCTAG(G/T)ATTCT intron-variant
rs10842795 -- 9,060,355(+) CTAAC(C/T)ATTCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00612 Gene

Variant ID Type Subtype PubMed ID
nsv1051530 CNV gain 25217958
nsv832327 CNV loss 17160897

Relevant External Links for LINC00612 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00612

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00612 Gene

Disorders for LINC00612 Gene

Relevant External Links for LINC00612

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00612

No disorders were found for LINC00612 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00612 Gene

Publications for LINC00612 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64

Products for LINC00612 Gene

Sources for LINC00612 Gene

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