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Aliases for LINC00612 Gene

Subcategory (RNA class) for LINC00612 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for LINC00612 Gene

  • Long Intergenic Non-Protein Coding RNA 612 2 3
  • C12orf33 3 4
  • Chromosome 12 Open Reading Frame 33 2

External Ids for LINC00612 Gene

ORGUL Members for LINC00612 Gene

Previous Symbols for LINC00612 Gene

  • C12orf33

Summaries for LINC00612 Gene

GeneCards Summary for LINC00612 Gene

LINC00612 (Long Intergenic Non-Protein Coding RNA 612) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00612 Gene

Genomics for LINC00612 Gene

Genomic Location for LINC00612 Gene

Start:
9,055,586 bp from pter
End:
9,065,070 bp from pter
Size:
9,485 bases
Orientation:
Minus strand

Genomic View for LINC00612 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC00612 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00612 Gene

No data available for Regulatory Elements for LINC00612 Gene

Proteins for LINC00612 Gene

  • Protein details for LINC00612 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N6U2-CL033_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00612
    Protein Accession:
    Q8N6U2
    Secondary Accessions:
    • B3KW01

    Protein attributes for LINC00612 Gene

    Size:
    182 amino acids
    Molecular mass:
    18370 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00612 Gene

Proteomics data for LINC00612 Gene at MOPED

Post-translational modifications for LINC00612 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00612 Gene

Domains for LINC00612 Gene

Gene Families for LINC00612 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for LINC00612 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00612: view

No data available for UniProtKB/Swiss-Prot for LINC00612 Gene

Function for LINC00612 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC00612 Gene

Localization for LINC00612 Gene

No data available for Gene Ontology (GO) - Cellular Components for LINC00612 Gene

Pathways for LINC00612 Gene

SuperPathways for LINC00612 Gene

No Data Available

Interacting Proteins for LINC00612 Gene

Gene Ontology (GO) - Biological Process for LINC00612 Gene

None

No data available for Pathways by source for LINC00612 Gene

Transcripts for LINC00612 Gene

mRNA/cDNA for LINC00612 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00612 Gene

Long intergenic non-protein coding RNA 612:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00612 Gene

No ASD Table

Relevant External Links for LINC00612 Gene

GeneLoc Exon Structure for
LINC00612
ECgene alternative splicing isoforms for
LINC00612

Expression for LINC00612 Gene

mRNA expression in normal human tissues for LINC00612 Gene

SOURCE GeneReport for Unigene cluster for LINC00612 Gene Hs.408739

genes like me logo Genes that share expressions with LINC00612: view

Orthologs for LINC00612 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for LINC00612 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Mug4-ps 16
Species with no ortholog for LINC00612:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC00612 Gene

ENSEMBL:
Gene Tree for LINC00612 (if available)
TreeFam:
Gene Tree for LINC00612 (if available)

Paralogs for LINC00612 Gene

No data available for Paralogs for LINC00612 Gene

Variants for LINC00612 Gene

Sequence variations from dbSNP and Humsavar for LINC00612 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs4882977 -- 9,059,550(+) CAAGA(C/T)TAGAC intron-variant
rs7294587 -- 9,062,313(+) TATTT(A/G)TATAT intron-variant
rs7310921 -- 9,062,063(+) TAGAT(A/G)TGTAA intron-variant
rs10842795 -- 9,060,355(+) CTAAC(C/T)ATTCC intron-variant
rs12300614 -- 9,061,582(+) gctta(A/G)gtaga intron-variant

Relevant External Links for LINC00612 Gene

HapMap Linkage Disequilibrium report
LINC00612

No data available for Structural Variations from Database of Genomic Variants (DGV) for LINC00612 Gene

Disorders for LINC00612 Gene

No disorders were found for LINC00612 Gene.

No data available for UniProtKB/Swiss-Prot for LINC00612 Gene

Publications for LINC00612 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4

Products for LINC00612 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC00612
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC00612
    • Block miRNA regulation of LINC00612 using miScript Target Protectors

    Sources for LINC00612 Gene

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