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Aliases for LINC00597 Gene

Subcategory (RNA class) for LINC00597 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for LINC00597 Gene

  • Long Intergenic Non-Protein Coding RNA 597 2 3
  • C15orf5 3 4
  • Chromosome 15 Open Reading Frame 5 2

External Ids for LINC00597 Gene

ORGUL Members for LINC00597 Gene

Previous HGNC Symbols for LINC00597 Gene

  • C15orf5

Previous GeneCards Identifiers for LINC00597 Gene

  • GC15M077517

Summaries for LINC00597 Gene

GeneCards Summary for LINC00597 Gene

LINC00597 (Long Intergenic Non-Protein Coding RNA 597) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00597 Gene

Genomics for LINC00597 Gene

Regulatory Elements for LINC00597 Gene

Enhancers for LINC00597 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G077224 1 Ensembl ENCODE 0.7 +0.7 743 1.1 ELF3 SOX13 TFAP4 SAP130 ZIC2 RARA RERE GATA2 SMC3 NR2F6 LINC00597 GC15P077220
GH15G077225 0.5 ENCODE 0.7 -1.3 -1283 1.5 CEBPA SMAD4 KAT2B LOC101929457 LINC00597 LOC646853
GH15G077266 0.7 ENCODE 0.3 -41.5 -41541 1.2 ZIC2 EP300 ZFHX2 ZNF316 GLIS1 PRDM10 FOS EMSY MAFK WT1 LOC646853 LINC00597
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00597 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00597 Gene

Chromosome:
15
Start:
77,223,893 bp from pter
End:
77,225,404 bp from pter
Size:
1,512 bases
Orientation:
Minus strand

Genomic View for LINC00597 Gene

Genes around LINC00597 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00597 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00597 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00597 Gene

Proteins for LINC00597 Gene

  • Protein details for LINC00597 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H2U6-CO005_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00597
    Protein Accession:
    Q9H2U6
    Secondary Accessions:
    • Q3SY27
    • Q9UMC1

    Protein attributes for LINC00597 Gene

    Size:
    94 amino acids
    Molecular mass:
    11474 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00597 Gene

Post-translational modifications for LINC00597 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00597 Gene

Domains & Families for LINC00597 Gene

Protein Domains for LINC00597 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00597: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00597 Gene

Function for LINC00597 Gene

Phenotypes for LINC00597 Gene

genes like me logo Genes that share phenotypes with LINC00597: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00597 Gene

Localization for LINC00597 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00597 Gene

Pathways & Interactions for LINC00597 Gene

SuperPathways for LINC00597 Gene

No Data Available

Interacting Proteins for LINC00597 Gene

Gene Ontology (GO) - Biological Process for LINC00597 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00597 Gene

Drugs & Compounds for LINC00597 Gene

No Compound Related Data Available

Transcripts for LINC00597 Gene

mRNA/cDNA for LINC00597 Gene

Unigene Clusters for LINC00597 Gene

Long intergenic non-protein coding RNA 597:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00597 Gene

No ASD Table

Relevant External Links for LINC00597 Gene

GeneLoc Exon Structure for
LINC00597
ECgene alternative splicing isoforms for
LINC00597

Expression for LINC00597 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00597 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00597 Gene:

LINC00597

SOURCE GeneReport for Unigene cluster for LINC00597 Gene:

Hs.656938

mRNA Expression by UniProt/SwissProt for LINC00597 Gene:

Q9H2U6-CO005_HUMAN
Tissue specificity: Expressed in heart.
genes like me logo Genes that share expression patterns with LINC00597: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00597 Gene

Orthologs for LINC00597 Gene

No data available for Orthologs and Evolution for LINC00597 Gene

Paralogs for LINC00597 Gene

No data available for Paralogs for LINC00597 Gene

Variants for LINC00597 Gene

Sequence variations from dbSNP and Humsavar for LINC00597 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000843552 -- 77,225,404(+) ATTAA(C/T)TGGTG intron-variant, nc-transcript-variant
rs1000917162 -- 77,225,633(+) GATGT(A/G)TGTGT intron-variant, upstream-variant-2KB
rs1001285435 -- 77,226,242(+) AAAAA(A/C)CCCTG intron-variant, upstream-variant-2KB
rs1002000741 -- 77,223,612(+) ATAAC(C/T)TACTT intron-variant, downstream-variant-500B
rs1002284945 -- 77,224,677(+) GTGAA(C/T)GCACA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00597 Gene

Variant ID Type Subtype PubMed ID
esv2749898 CNV deletion 23290073
esv3581775 CNV loss 25503493
nsv1040852 CNV gain 25217958
nsv1041064 CNV loss 25217958
nsv1116463 OTHER inversion 24896259

Relevant External Links for LINC00597 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00597

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00597 Gene

Disorders for LINC00597 Gene

Relevant External Links for LINC00597

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00597

No disorders were found for LINC00597 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00597 Gene

Publications for LINC00597 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. Identification of C15orf5, a heart-enriched transcript on chromosome 15q23-q24. (PMID: 11697146) Carim-Todd L. … Escarceller M. (DNA Seq. 2001) 3 4 64
  3. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody M.C. … Nusbaum C. (Nature 2006) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC00597 Gene

Sources for LINC00597 Gene

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