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Aliases for LINC00596 Gene

Subcategory (RNA class) for LINC00596 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00596 Gene

  • Long Intergenic Non-Protein Coding RNA 596 2 3 5
  • C14orf165 3 4
  • Chromosome 14 Open Reading Frame 165 2
  • CNSLT1I7G 3

External Ids for LINC00596 Gene

Previous HGNC Symbols for LINC00596 Gene

  • C14orf165

Previous GeneCards Identifiers for LINC00596 Gene

  • GC14M024392

Summaries for LINC00596 Gene

GeneCards Summary for LINC00596 Gene

LINC00596 (Long Intergenic Non-Protein Coding RNA 596) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00596 Gene

Genomics for LINC00596 Gene

Regulatory Elements for LINC00596 Gene

Enhancers for LINC00596 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G023929 0.9 ENCODE 0.7 +4.6 4632 0.2 MLX ARID4B ZNF48 GLIS2 ZNF143 SP3 MIER2 PPARG KAT8 MIER3 LOC105370411 LINC00596
GH14G023936 0.8 ENCODE 0.7 -2.0 -1979 0.2 SOX13 MAX ZNF644 RAD21 YY1 TEAD3 NCOR1 HNF4G NR2F6 HOMEZ DHRS4 LINC00596
GH14G023931 0.8 ENCODE 0.7 +2.3 2326 0.8 HDAC1 TAL1 DDX20 PYGO2 CCNT2 FOXM1 GATA2 NCOR1 NR2F6 SMARCE1 DHRS4L2 LINC00596 LOC105370411
GH14G023939 0.9 ENCODE 0.4 -5.4 -5371 0.8 HDAC1 ATF1 ARNT ARID4B DMAP1 RARA TCF12 GATA4 KLF13 THAP11 DHRS4-AS1 DHRS4 LINC00596
GH14G023951 0.8 ENCODE 0.4 -17.4 -17369 0.3 CTCF TFAP4 ZNF792 SAP130 TAF1 ARID4B DMAP1 ZNF644 ZNF48 RAD21 DHRS4-AS1 DHRS4 ZFHX2 ZFHX2-AS1 LINC00596
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00596 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00596 Gene

Chromosome:
14
Start:
23,838,474 bp from pter
End:
23,934,568 bp from pter
Size:
96,095 bases
Orientation:
Minus strand

Genomic View for LINC00596 Gene

Genes around LINC00596 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00596 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00596 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00596 Gene

Proteins for LINC00596 Gene

  • Protein details for LINC00596 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86U02-CN165_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00596
    Protein Accession:
    Q86U02

    Protein attributes for LINC00596 Gene

    Size:
    117 amino acids
    Molecular mass:
    13541 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00596 Gene

Post-translational modifications for LINC00596 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00596 Gene

Domains & Families for LINC00596 Gene

Protein Domains for LINC00596 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00596: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00596 Gene

Function for LINC00596 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00596 Gene

Localization for LINC00596 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LINC00596 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for LINC00596 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with LINC00596: view

No data available for Subcellular locations from COMPARTMENTS for LINC00596 Gene

Pathways & Interactions for LINC00596 Gene

SuperPathways for LINC00596 Gene

No Data Available

Interacting Proteins for LINC00596 Gene

Gene Ontology (GO) - Biological Process for LINC00596 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0048741 NOT skeletal muscle fiber development IBA --
genes like me logo Genes that share ontologies with LINC00596: view

No data available for Pathways by source and SIGNOR curated interactions for LINC00596 Gene

Drugs & Compounds for LINC00596 Gene

No Compound Related Data Available

Transcripts for LINC00596 Gene

mRNA/cDNA for LINC00596 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00596 Gene

No ASD Table

Relevant External Links for LINC00596 Gene

GeneLoc Exon Structure for
LINC00596
ECgene alternative splicing isoforms for
LINC00596

Expression for LINC00596 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00596 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00596 Gene

This gene is overexpressed in Testis (x41.7) and Pancreas (x5.4).

NURSA nuclear receptor signaling pathways regulating expression of LINC00596 Gene:

LINC00596
genes like me logo Genes that share expression patterns with LINC00596: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00596 Gene

Orthologs for LINC00596 Gene

Evolution for LINC00596 Gene

ENSEMBL:
Gene Tree for LINC00596 (if available)
TreeFam:
Gene Tree for LINC00596 (if available)

No data available for Orthologs for LINC00596 Gene

Paralogs for LINC00596 Gene

No data available for Paralogs for LINC00596 Gene

Variants for LINC00596 Gene

Sequence variations from dbSNP and Humsavar for LINC00596 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000002573 -- 23,865,736(+) TCACA(C/G)AAGGA intron-variant
rs1000058296 -- 23,915,195(+) TATAT(C/G)TACAT intron-variant
rs1000083981 -- 23,915,647(+) TACTT(C/T)TATAA intron-variant
rs1000111737 -- 23,915,024(+) TTGTA(A/G)AGATG intron-variant
rs1000112219 -- 23,872,193(+) GAACA(A/G)CATAA intron-variant

Relevant External Links for LINC00596 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00596

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00596 Gene

Disorders for LINC00596 Gene

Relevant External Links for LINC00596

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00596

No disorders were found for LINC00596 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00596 Gene

Publications for LINC00596 Gene

  1. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R. … Weissenbach J. (Nature 2003) 3 4 64
  2. Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder. (PMID: 18711365) Ferreira M.A. … Craddock N. (Nat. Genet. 2008) 3 64

Products for LINC00596 Gene

Sources for LINC00596 Gene

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