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Aliases for LINC00595 Gene

Subcategory (RNA class) for LINC00595 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00595 Gene

  • Long Intergenic Non-Protein Coding RNA 595 2 3
  • Long Intergenic Non-Protein Coding RNA 856 5
  • Chromosome 10 Open Reading Frame 101 2
  • C10orf101 3
  • LINC00856 5

External Ids for LINC00595 Gene

Previous HGNC Symbols for LINC00595 Gene

  • C10orf101

Previous GeneCards Identifiers for LINC00595 Gene

  • GC10P080106
  • GC10P080468
  • GC10P080753
  • GC10P081181
  • GC10P078267
  • GC10P078369
  • GC10P078585
  • GC10P078835

Summaries for LINC00595 Gene

GeneCards Summary for LINC00595 Gene

LINC00595 (Long Intergenic Non-Protein Coding RNA 595) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC00595 include Retinitis Pigmentosa 11.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00595 Gene

Genomics for LINC00595 Gene

Regulatory Elements for LINC00595 Gene

Enhancers for LINC00595 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G078266 1 Ensembl ENCODE dbSUPER 12.9 +88.2 88219 1.5 GATA3 IKZF1 ZIC2 LINC00595 GC10P079494 GC10P079091
GH10G078262 1.1 FANTOM5 ENCODE dbSUPER 7.6 +84.3 84339 2.0 FOSL1 MNT FOS NFE2L2 LINC00595 GC10P079494 GC10P079091
GH10G078212 1.7 VISTA Ensembl ENCODE dbSUPER 0.3 +35.6 35637 5.5 CTCF MXI1 NFIB RNF2 TAL1 BHLHE40 CEBPB ZIC2 RAD21 EP300 LINC00595 LINC00856 GC10P079494
GH10G078254 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +76.8 76819 2.8 PKNOX1 ATF1 SIN3A ZNF766 ELK1 GATA2 FOS CAVIN1 NCOA1 REST RPS24 GC10P079494 LINC00595 LINC00856
GH10G078197 0.9 ENCODE dbSUPER 0.4 +17.9 17934 0.1 PKNOX1 ZNF687 BHLHE40 ZSCAN4 TARDBP FOS HES1 ZKSCAN1 LINC00595 LINC00856 GC10P079494
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00595 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00595 Gene

Chromosome:
10
Start:
78,179,185 bp from pter
End:
78,551,355 bp from pter
Size:
372,171 bases
Orientation:
Plus strand

Genomic View for LINC00595 Gene

Genes around LINC00595 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00595 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00595 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00595 Gene

Proteins for LINC00595 Gene

Post-translational modifications for LINC00595 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00595 Gene

Domains & Families for LINC00595 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00595 Gene

Function for LINC00595 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00595 Gene

Localization for LINC00595 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00595 Gene

Pathways & Interactions for LINC00595 Gene

SuperPathways for LINC00595 Gene

No Data Available

Interacting Proteins for LINC00595 Gene

Gene Ontology (GO) - Biological Process for LINC00595 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00595 Gene

Drugs & Compounds for LINC00595 Gene

No Compound Related Data Available

Transcripts for LINC00595 Gene

mRNA/cDNA for LINC00595 Gene

(17) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00595 Gene

No ASD Table

Relevant External Links for LINC00595 Gene

GeneLoc Exon Structure for
LINC00595
ECgene alternative splicing isoforms for
LINC00595

Expression for LINC00595 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00595 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00595 Gene

This gene is overexpressed in Colon - Sigmoid (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of LINC00595 Gene:

LINC00595
genes like me logo Genes that share expression patterns with LINC00595: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00595 Gene

Orthologs for LINC00595 Gene

Evolution for LINC00595 Gene

ENSEMBL:
Gene Tree for LINC00595 (if available)
TreeFam:
Gene Tree for LINC00595 (if available)

No data available for Orthologs for LINC00595 Gene

Paralogs for LINC00595 Gene

No data available for Paralogs for LINC00595 Gene

Variants for LINC00595 Gene

Sequence variations from dbSNP and Humsavar for LINC00595 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000529600 -- 78,276,295(+) TTTCT(A/T)GTCTT intron-variant
rs1000861007 -- 78,272,959(+) GCCAC(A/G)CTTTG intron-variant
rs1001018250 -- 78,280,519(+) CCTTC(A/G)TTGGA downstream-variant-500B
rs1001267307 -- 78,279,965(+) TCCCC(C/T)GCCCT nc-transcript-variant
rs1001339005 -- 78,268,818(+) GTCTT(A/C)CATGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00595 Gene

Variant ID Type Subtype PubMed ID
dgv1273n54 CNV loss 21841781

Relevant External Links for LINC00595 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00595

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00595 Gene

Disorders for LINC00595 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00595 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for LINC00595

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00595
genes like me logo Genes that share disorders with LINC00595: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00595 Gene

Publications for LINC00595 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for LINC00595 Gene

Sources for LINC00595 Gene

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