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Aliases for LINC00595 Gene

Subcategory (RNA class) for LINC00595 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00595 Gene

  • Long Intergenic Non-Protein Coding RNA 595 2 3
  • Long Intergenic Non-Protein Coding RNA 856 5
  • Chromosome 10 Open Reading Frame 101 2
  • C10orf101 3
  • LINC00856 5

External Ids for LINC00595 Gene

Previous HGNC Symbols for LINC00595 Gene

  • C10orf101

Previous GeneCards Identifiers for LINC00595 Gene

  • GC10P080106
  • GC10P080468
  • GC10P080753
  • GC10P081181
  • GC10P078267

Summaries for LINC00595 Gene

GeneCards Summary for LINC00595 Gene

LINC00595 (Long Intergenic Non-Protein Coding RNA 595) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00595 Gene

Genomics for LINC00595 Gene

Genomic Location for LINC00595 Gene

Chromosome:
10
Start:
78,179,185 bp from pter
End:
78,551,355 bp from pter
Size:
372,171 bases
Orientation:
Plus strand

Genomic View for LINC00595 Gene

Genes around LINC00595 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00595 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00595 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00595 Gene

No data available for Regulatory Elements for LINC00595 Gene

Proteins for LINC00595 Gene

Post-translational modifications for LINC00595 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00595 Gene

Domains & Families for LINC00595 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00595 Gene

Function for LINC00595 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00595 Gene

Localization for LINC00595 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00595 Gene

Pathways & Interactions for LINC00595 Gene

SuperPathways for LINC00595 Gene

No Data Available

Interacting Proteins for LINC00595 Gene

Gene Ontology (GO) - Biological Process for LINC00595 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00595 Gene

Drugs & Compounds for LINC00595 Gene

No Compound Related Data Available

Transcripts for LINC00595 Gene

mRNA/cDNA for LINC00595 Gene

(17) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00595 Gene

No ASD Table

Relevant External Links for LINC00595 Gene

GeneLoc Exon Structure for
LINC00595
ECgene alternative splicing isoforms for
LINC00595

Expression for LINC00595 Gene

mRNA expression in normal human tissues for LINC00595 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00595 Gene

This gene is overexpressed in Colon - Sigmoid (x5.2).
genes like me logo Genes that share expression patterns with LINC00595: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LINC00595 Gene

Orthologs for LINC00595 Gene

Evolution for LINC00595 Gene

ENSEMBL:
Gene Tree for LINC00595 (if available)
TreeFam:
Gene Tree for LINC00595 (if available)

No data available for Orthologs for LINC00595 Gene

Paralogs for LINC00595 Gene

No data available for Paralogs for LINC00595 Gene

Variants for LINC00595 Gene

Sequence variations from dbSNP and Humsavar for LINC00595 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1030446 -- 78,276,678(+) AAACA(A/G)TCCTC intron-variant
rs736589 -- 78,277,268(+) CTCCT(A/C)CCTCT intron-variant
rs1060669 -- 78,280,092(+) TCTGC(A/C)TTTAT nc-transcript-variant
rs1880050 -- 78,272,232(-) GTTCA(A/G/T)CTGGG intron-variant
rs1880053 -- 78,266,244(-) CCCAC(C/G)TCCCT upstream-variant-2KB

Relevant External Links for LINC00595 Gene

HapMap Linkage Disequilibrium report
LINC00595

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00595 Gene

Disorders for LINC00595 Gene

Relevant External Links for LINC00595

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00595

No disorders were found for LINC00595 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00595 Gene

Publications for LINC00595 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 67
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for LINC00595 Gene

Sources for LINC00595 Gene

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