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Aliases for LINC00595 Gene

Subcategory (RNA class) for LINC00595 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00595 Gene

  • Long Intergenic Non-Protein Coding RNA 595 2 3 5
  • Chromosome 10 Open Reading Frame 101 2
  • C10orf101 3

External Ids for LINC00595 Gene

Previous HGNC Symbols for LINC00595 Gene

  • C10orf101

Previous GeneCards Identifiers for LINC00595 Gene

  • GC10P080106
  • GC10P080468
  • GC10P080753
  • GC10P081181
  • GC10P078267
  • GC10P078369
  • GC10P078585
  • GC10P078835
  • GC10P079085
  • GC10P079333

Summaries for LINC00595 Gene

GeneCards Summary for LINC00595 Gene

LINC00595 (Long Intergenic Non-Protein Coding RNA 595) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC00595 include Retinitis Pigmentosa 11.

Additional gene information for LINC00595 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00595 Gene

Genomics for LINC00595 Gene

GeneHancer (GH) Regulatory Elements for LINC00595 Gene

Promoters and enhancers for LINC00595 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I078175 Enhancer 0.8 VISTA 550.8 -1.1 -1109 4.5 KLF1 ZIC2 ZKSCAN1 ZNF664 ZFHX2 ZFP36 HNF4A WT1 ENSG00000282863 ENSG00000283096 LINC00595 LINC00856 LOC105378374 LOC105378375 RPS24
GH10I078266 Enhancer 0.9 Ensembl ENCODE dbSUPER 12.9 +88.2 88218 1.5 GATA3 ZNF189 IKZF1 ZIC2 RFX5 LINC00595 GC10P081718 GC10P080329 ENSG00000282863 LINC00856
GH10I078262 Enhancer 1 FANTOM5 ENCODE dbSUPER 7.6 +84.3 84338 2 FOSL1 SP1 FOSL2 MNT FOS NFE2L2 LINC00595 GC10P081718 GC10P080329 LINC00856 ENSG00000282863
GH10I078212 Enhancer 1.4 VISTA Ensembl ENCODE dbSUPER 0.3 +35.6 35636 5.5 MXI1 TAL1 CEBPB CBFA2T3 ZIC2 NR2F2 TCF12 JUND NFIC POLR2A LINC00595 LINC00856 ENSG00000282863 GC10P081718
GH10I078254 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +76.8 76819 2.8 PKNOX1 ATF1 SIN3A ZNF766 GATA2 ATF7 FOS CAVIN1 NCOA1 REST RPS24 GC10P081718 ENSG00000282863 LINC00595 LINC00856
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00595 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00595 Gene

Genomic Locations for LINC00595 Gene
chr10:78,179,185-78,551,355
(GRCh38/hg38)
Size:
372,171 bases
Orientation:
Plus strand
chr10:80,027,085-80,090,352
(GRCh37/hg19)

Genomic View for LINC00595 Gene

Genes around LINC00595 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00595 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00595 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00595 Gene

Proteins for LINC00595 Gene

Post-translational modifications for LINC00595 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00595 Gene

Domains & Families for LINC00595 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00595 Gene

Function for LINC00595 Gene

Phenotypes From GWAS Catalog for LINC00595 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00595 Gene

Localization for LINC00595 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00595 Gene

Pathways & Interactions for LINC00595 Gene

SuperPathways for LINC00595 Gene

No Data Available

Interacting Proteins for LINC00595 Gene

Gene Ontology (GO) - Biological Process for LINC00595 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00595 Gene

Drugs & Compounds for LINC00595 Gene

No Compound Related Data Available

Transcripts for LINC00595 Gene

mRNA/cDNA for LINC00595 Gene

(17) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00595 Gene

No ASD Table

Relevant External Links for LINC00595 Gene

GeneLoc Exon Structure for
LINC00595
ECgene alternative splicing isoforms for
LINC00595

Expression for LINC00595 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00595 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00595 Gene

This gene is overexpressed in Colon - Sigmoid (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of LINC00595 Gene:

LINC00595
genes like me logo Genes that share expression patterns with LINC00595: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00595 Gene

Orthologs for LINC00595 Gene

Evolution for LINC00595 Gene

ENSEMBL:
Gene Tree for LINC00595 (if available)
TreeFam:
Gene Tree for LINC00595 (if available)

No data available for Orthologs for LINC00595 Gene

Paralogs for LINC00595 Gene

No data available for Paralogs for LINC00595 Gene

Variants for LINC00595 Gene

Sequence variations from dbSNP and Humsavar for LINC00595 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000529600 -- 78,276,295(+) T/A intron_variant
rs1000861007 -- 78,272,959(+) A/G intron_variant
rs1001018250 -- 78,280,519(+) A/G downstream_transcript_variant
rs1001267307 -- 78,279,965(+) T/C non_coding_transcript_variant
rs1001339005 -- 78,268,818(+) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00595 Gene

Variant ID Type Subtype PubMed ID
dgv1273n54 CNV loss 21841781

Additional Variant Information for LINC00595 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00595

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00595 Gene

Disorders for LINC00595 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00595 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00595

genes like me logo Genes that share disorders with LINC00595: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00595 Gene

Publications for LINC00595 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC00595 Gene

Sources for LINC00595 Gene

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