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Aliases for LINC00593 Gene

Subcategory (RNA class) for LINC00593 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00593 Gene

  • Long Intergenic Non-Protein Coding RNA 593 2 3 5
  • Chromosome 15 Open Reading Frame 50 2
  • C15orf50 3

External Ids for LINC00593 Gene

Previous HGNC Symbols for LINC00593 Gene

  • C15orf50

Previous GeneCards Identifiers for LINC00593 Gene

  • GC15P070132

Summaries for LINC00593 Gene

GeneCards Summary for LINC00593 Gene

LINC00593 (Long Intergenic Non-Protein Coding RNA 593) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00593 Gene

Genomics for LINC00593 Gene

Regulatory Elements for LINC00593 Gene

Enhancers for LINC00593 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F069852 1.4 FANTOM5 Ensembl ENCODE 0.3 +18.8 18782 3.7 TBP PKNOX1 FEZF1 RAD21 ZNF121 SMARCC2 RCOR1 FOS DEK ZNF263 MIR629 LINC00593 GC15M070005
GH15F069861 1 Ensembl ENCODE 0.3 +27.2 27202 2.5 CTCF ZNF263 PKNOX1 BHLHE40 GLI4 NR2F2 GATA3 SMARCA4 PBX2 ZNF341 LINC00593 GC15M070005
GH15F069857 0.7 Ensembl 0.3 +23.0 22967 0.8 ZIC2 RAD21 ZNF316 NFE2 FOS MAFK TCF7L2 ZBTB20 NFE2L2 MAFG LINC00593 GC15M070005
GH15F069904 0.9 ENCODE 0.2 +68.9 68923 0.0 SIN3A DMAP1 THRB YY1 RARA ZEB1 ZNF335 SCRT2 CREM ZNF263 LINC00593 GC15M070005
GH15F069903 0.8 Ensembl 0.2 +68.5 68467 0.2 TFAP4 SIN3A ZNF384 ZIC2 YY1 GLIS2 ZFHX2 HNF4G NFE2 FOS MIR629 LINC00593 GC15M070005
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00593 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00593 Gene

Chromosome:
15
Start:
69,835,234 bp from pter
End:
69,843,120 bp from pter
Size:
7,887 bases
Orientation:
Plus strand

Genomic View for LINC00593 Gene

Genes around LINC00593 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00593 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00593 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00593 Gene

Proteins for LINC00593 Gene

Post-translational modifications for LINC00593 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00593 Gene

Domains & Families for LINC00593 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00593 Gene

Function for LINC00593 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00593 Gene

Localization for LINC00593 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00593 Gene

Pathways & Interactions for LINC00593 Gene

SuperPathways for LINC00593 Gene

No Data Available

Interacting Proteins for LINC00593 Gene

Gene Ontology (GO) - Biological Process for LINC00593 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00593 Gene

Transcripts for LINC00593 Gene

mRNA/cDNA for LINC00593 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00593 Gene

Long intergenic non-protein coding RNA 593:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00593 Gene

No ASD Table

Relevant External Links for LINC00593 Gene

GeneLoc Exon Structure for
LINC00593
ECgene alternative splicing isoforms for
LINC00593

Expression for LINC00593 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00593 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00593 Gene

This gene is overexpressed in Testis (x21.8) and Whole Blood (x17.7).

NURSA nuclear receptor signaling pathways regulating expression of LINC00593 Gene:

LINC00593

SOURCE GeneReport for Unigene cluster for LINC00593 Gene:

Hs.569502
genes like me logo Genes that share expression patterns with LINC00593: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC00593 Gene

Orthologs for LINC00593 Gene

Evolution for LINC00593 Gene

ENSEMBL:
Gene Tree for LINC00593 (if available)
TreeFam:
Gene Tree for LINC00593 (if available)

No data available for Orthologs for LINC00593 Gene

Paralogs for LINC00593 Gene

No data available for Paralogs for LINC00593 Gene

Variants for LINC00593 Gene

Sequence variations from dbSNP and Humsavar for LINC00593 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs10152118 -- 69,836,657(+) TGGGA(C/T)GTGTG intron-variant
rs10565654 -- 69,843,056(+) CCACT(-/CATC)CATCC downstream-variant-500B
rs10667104 -- 69,838,713(+) ACAAA(-/ACAA)ACAAA intron-variant
rs11072122 -- 69,834,105(+) CTGTA(G/T)GCATG upstream-variant-2KB
rs111502716 -- 69,842,623(+) ATCAG(C/T)ACAGG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00593 Gene

Variant ID Type Subtype PubMed ID
nsv523368 CNV loss 19592680

Relevant External Links for LINC00593 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00593

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00593 Gene

Disorders for LINC00593 Gene

Relevant External Links for LINC00593

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00593

No disorders were found for LINC00593 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00593 Gene

Publications for LINC00593 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for LINC00593 Gene

Sources for LINC00593 Gene

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