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Aliases for LINC00593 Gene

Subcategory (RNA class) for LINC00593 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for LINC00593 Gene

  • Long Intergenic Non-Protein Coding RNA 593 2 3
  • Chromosome 15 Open Reading Frame 50 2
  • C15orf50 3

External Ids for LINC00593 Gene

ORGUL Members for LINC00593 Gene

Previous HGNC Symbols for LINC00593 Gene

  • C15orf50

Previous GeneCards Identifiers for LINC00593 Gene

  • GC15P070132

Summaries for LINC00593 Gene

GeneCards Summary for LINC00593 Gene

LINC00593 (Long Intergenic Non-Protein Coding RNA 593) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00593 Gene

Genomics for LINC00593 Gene

Genomic Location for LINC00593 Gene

Start:
69,835,234 bp from pter
End:
69,843,120 bp from pter
Size:
7,887 bases
Orientation:
Plus strand

Genomic View for LINC00593 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC00593 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00593 Gene

No data available for Regulatory Elements for LINC00593 Gene

Proteins for LINC00593 Gene

Post-translational modifications for LINC00593 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00593 Gene

Domains for LINC00593 Gene

Gene Families for LINC00593 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00593: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00593 Gene

Function for LINC00593 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC00593 Gene

Localization for LINC00593 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00593 Gene

Pathways for LINC00593 Gene

SuperPathways for LINC00593 Gene

No Data Available

Interacting Proteins for LINC00593 Gene

Gene Ontology (GO) - Biological Process for LINC00593 Gene

None

No data available for Pathways by source for LINC00593 Gene

Transcripts for LINC00593 Gene

mRNA/cDNA for LINC00593 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00593 Gene

Long intergenic non-protein coding RNA 593:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC00593
    • Block miRNA regulation of LINC00593 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC00593

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for LINC00593 Gene

    No ASD Table

    Relevant External Links for LINC00593 Gene

    GeneLoc Exon Structure for
    LINC00593
    ECgene alternative splicing isoforms for
    LINC00593

    Expression for LINC00593 Gene

    mRNA expression in normal human tissues for LINC00593 Gene

    mRNA differential expression in normal tissues according to GTEx for LINC00593 Gene

    This gene is overexpressed in Testis (21.8) and Whole Blood (17.7).

    SOURCE GeneReport for Unigene cluster for LINC00593 Gene Hs.569502

    genes like me logo Genes that share expressions with LINC00593: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for LINC00593 Gene

    Orthologs for LINC00593 Gene

    Evolution for LINC00593 Gene

    ENSEMBL:
    Gene Tree for LINC00593 (if available)
    TreeFam:
    Gene Tree for LINC00593 (if available)

    No data available for Orthologs for LINC00593 Gene

    Paralogs for LINC00593 Gene

    No data available for Paralogs for LINC00593 Gene

    Variants for LINC00593 Gene

    Sequence variations from dbSNP and Humsavar for LINC00593 Gene

    SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
    rs216119 -- 69,837,096(+) AGAGA(C/T)GGAGA intron-variant
    rs216120 -- 69,841,968(+) aatgt(A/C)actgt intron-variant
    rs304984 -- 69,842,593(-) TTGGG(C/T)CCCGG nc-transcript-variant
    rs304987 -- 69,835,267(+) TCACC(A/G)GCCTC nc-transcript-variant
    rs304988 -- 69,836,326(+) ATGCA(C/T)CTGCC intron-variant

    Relevant External Links for LINC00593 Gene

    HapMap Linkage Disequilibrium report
    LINC00593

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC00593 Gene

    Disorders for LINC00593 Gene

    No disorders were found for LINC00593 Gene.

    No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for LINC00593 Gene

    Publications for LINC00593 Gene

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3

    Products for LINC00593 Gene

    Sources for LINC00593 Gene

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