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Aliases for LINC00593 Gene

Subcategory (RNA class) for LINC00593 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00593 Gene

  • Long Intergenic Non-Protein Coding RNA 593 2 3 5
  • Chromosome 15 Open Reading Frame 50 2
  • C15orf50 3

External Ids for LINC00593 Gene

Previous HGNC Symbols for LINC00593 Gene

  • C15orf50

Previous GeneCards Identifiers for LINC00593 Gene

  • GC15P070132

Summaries for LINC00593 Gene

GeneCards Summary for LINC00593 Gene

LINC00593 (Long Intergenic Non-Protein Coding RNA 593) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00593 Gene

Genomics for LINC00593 Gene

Regulatory Elements for LINC00593 Gene

Enhancers for LINC00593 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around LINC00593 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00593 Gene

Chromosome:
15
Start:
69,835,234 bp from pter
End:
69,843,120 bp from pter
Size:
7,887 bases
Orientation:
Plus strand

Genomic View for LINC00593 Gene

Genes around LINC00593 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00593 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00593 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00593 Gene

Proteins for LINC00593 Gene

Post-translational modifications for LINC00593 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00593 Gene

Domains & Families for LINC00593 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00593 Gene

Function for LINC00593 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00593 Gene

Localization for LINC00593 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00593 Gene

Pathways & Interactions for LINC00593 Gene

SuperPathways for LINC00593 Gene

No Data Available

Interacting Proteins for LINC00593 Gene

Gene Ontology (GO) - Biological Process for LINC00593 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00593 Gene

Drugs & Compounds for LINC00593 Gene

No Compound Related Data Available

Transcripts for LINC00593 Gene

mRNA/cDNA for LINC00593 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00593 Gene

Long intergenic non-protein coding RNA 593:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00593 Gene

No ASD Table

Relevant External Links for LINC00593 Gene

GeneLoc Exon Structure for
LINC00593
ECgene alternative splicing isoforms for
LINC00593

Expression for LINC00593 Gene

mRNA expression in normal human tissues for LINC00593 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00593 Gene

This gene is overexpressed in Testis (x21.8) and Whole Blood (x17.7).

SOURCE GeneReport for Unigene cluster for LINC00593 Gene Hs.569502

genes like me logo Genes that share expression patterns with LINC00593: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LINC00593 Gene

Orthologs for LINC00593 Gene

Evolution for LINC00593 Gene

ENSEMBL:
Gene Tree for LINC00593 (if available)
TreeFam:
Gene Tree for LINC00593 (if available)

No data available for Orthologs for LINC00593 Gene

Paralogs for LINC00593 Gene

No data available for Paralogs for LINC00593 Gene

Variants for LINC00593 Gene

Sequence variations from dbSNP and Humsavar for LINC00593 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs88505 -- 69,835,250(+) GCTGC(A/G)GTTAA nc-transcript-variant
rs216119 -- 69,837,096(+) AGAGA(C/T)GGAGA intron-variant
rs216120 -- 69,841,968(+) aatgt(A/C)actgt intron-variant
rs304984 -- 69,842,593(-) TTGGG(C/T)CCCGG nc-transcript-variant
rs304987 -- 69,835,267(+) TCACC(A/G)GCCTC nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LINC00593 Gene

Disorders for LINC00593 Gene

Relevant External Links for LINC00593

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00593

No disorders were found for LINC00593 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00593 Gene

Publications for LINC00593 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 67

Products for LINC00593 Gene

Sources for LINC00593 Gene

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