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Aliases for LINC00588 Gene

Subcategory (RNA class) for LINC00588 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for LINC00588 Gene

  • Long Intergenic Non-Protein Coding RNA 588 2 3
  • C8orf71 3 4
  • Chromosome 8 Open Reading Frame 71 2

External Ids for LINC00588 Gene

ORGUL Members for LINC00588 Gene

Previous HGNC Symbols for LINC00588 Gene

  • C8orf71

Previous GeneCards Identifiers for LINC00588 Gene

  • GC08P058193

Summaries for LINC00588 Gene

GeneCards Summary for LINC00588 Gene

LINC00588 (Long Intergenic Non-Protein Coding RNA 588) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00588 Gene

Genomics for LINC00588 Gene

Genomic Location for LINC00588 Gene

Start:
57,279,543 bp from pter
End:
57,284,731 bp from pter
Size:
5,189 bases
Orientation:
Plus strand

Genomic View for LINC00588 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC00588 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00588 Gene

No data available for Regulatory Elements for LINC00588 Gene

Proteins for LINC00588 Gene

  • Protein details for LINC00588 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y4M8-CH071_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00588
    Protein Accession:
    Q9Y4M8
    Secondary Accessions:

    Protein attributes for LINC00588 Gene

    Size:
    146 amino acids
    Molecular mass:
    16018 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00588 Gene

Proteomics data for LINC00588 Gene at MOPED

Post-translational modifications for LINC00588 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00588 Gene

Domains for LINC00588 Gene

Gene Families for LINC00588 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for LINC00588 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00588: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00588 Gene

Function for LINC00588 Gene

Gene Ontology (GO) - Molecular Function for LINC00588 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with LINC00588: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC00588 Gene

Localization for LINC00588 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00588 Gene

Pathways for LINC00588 Gene

SuperPathways for LINC00588 Gene

No Data Available

Interacting Proteins for LINC00588 Gene

Selected Interacting proteins: Q9Y4M8-CH071_HUMAN for LINC00588 Gene via UniProtKB

Symbol External ID(s) Details
RBPMS

Gene Ontology (GO) - Biological Process for LINC00588 Gene

None

No data available for Pathways by source for LINC00588 Gene

Transcripts for LINC00588 Gene

mRNA/cDNA for LINC00588 Gene

(10) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00588 Gene

Long intergenic non-protein coding RNA 588:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC00588
    • Block miRNA regulation of LINC00588 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC00588

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for LINC00588
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for LINC00588 Gene

    No ASD Table

    Relevant External Links for LINC00588 Gene

    GeneLoc Exon Structure for
    LINC00588
    ECgene alternative splicing isoforms for
    LINC00588

    Expression for LINC00588 Gene

    mRNA expression in normal human tissues for LINC00588 Gene

    mRNA differential expression in normal tissues according to GTEx for LINC00588 Gene

    This gene is overexpressed in Testis (40.0).

    SOURCE GeneReport for Unigene cluster for LINC00588 Gene Hs.159352

    genes like me logo Genes that share expressions with LINC00588: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for LINC00588 Gene

    Orthologs for LINC00588 Gene

    Evolution for LINC00588 Gene

    ENSEMBL:
    Gene Tree for LINC00588 (if available)
    TreeFam:
    Gene Tree for LINC00588 (if available)

    No data available for Orthologs for LINC00588 Gene

    Paralogs for LINC00588 Gene

    No data available for Paralogs for LINC00588 Gene

    Variants for LINC00588 Gene

    Sequence variations from dbSNP and Humsavar for LINC00588 Gene

    SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
    rs1390411 -- 57,281,587(-) TATAC(G/T)TTCTT intron-variant
    rs1874373 -- 57,281,864(-) GTGTG(A/G)TTTAA intron-variant
    rs1874374 -- 57,281,863(-) TGTGA(C/T)TTAAT intron-variant
    rs2270607 -- 57,282,140(-) TCATC(C/T)TCACA nc-transcript-variant
    rs2270608 -- 57,282,129(-) AACTT(A/G)GGACA nc-transcript-variant

    Relevant External Links for LINC00588 Gene

    HapMap Linkage Disequilibrium report
    LINC00588

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC00588 Gene

    Disorders for LINC00588 Gene

    No disorders were found for LINC00588 Gene.

    No data available for UniProtKB/Swiss-Prot for LINC00588 Gene

    Publications for LINC00588 Gene

    1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
    3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
    4. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 4

    Products for LINC00588 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC00588
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for LINC00588
      • Block miRNA regulation of LINC00588 using miScript Target Protectors

      Sources for LINC00588 Gene

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