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Aliases for LINC00588 Gene

Subcategory (RNA class) for LINC00588 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00588 Gene

  • Long Intergenic Non-Protein Coding RNA 588 2 3 5
  • C8orf71 3 4
  • Chromosome 8 Open Reading Frame 71 2

External Ids for LINC00588 Gene

Previous HGNC Symbols for LINC00588 Gene

  • C8orf71

Previous GeneCards Identifiers for LINC00588 Gene

  • GC08P058193

Summaries for LINC00588 Gene

GeneCards Summary for LINC00588 Gene

LINC00588 (Long Intergenic Non-Protein Coding RNA 588) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00588 Gene

Genomics for LINC00588 Gene

Regulatory Elements for LINC00588 Gene

Enhancers for LINC00588 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F057277 0.6 FANTOM5 0.8 -2.0 -2030 0.2 ENSG00000251142 LINC00588 LOC286177
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LINC00588 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00588 Gene

Chromosome:
8
Start:
57,279,543 bp from pter
End:
57,284,731 bp from pter
Size:
5,189 bases
Orientation:
Plus strand

Genomic View for LINC00588 Gene

Genes around LINC00588 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00588 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00588 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00588 Gene

Proteins for LINC00588 Gene

  • Protein details for LINC00588 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y4M8-CH071_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00588
    Protein Accession:
    Q9Y4M8

    Protein attributes for LINC00588 Gene

    Size:
    146 amino acids
    Molecular mass:
    16018 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00588 Gene

Post-translational modifications for LINC00588 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00588 Gene

Domains & Families for LINC00588 Gene

Protein Domains for LINC00588 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00588: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00588 Gene

Function for LINC00588 Gene

Gene Ontology (GO) - Molecular Function for LINC00588 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with LINC00588: view

Phenotypes for LINC00588 Gene

GenomeRNAi human phenotypes for LINC00588:
genes like me logo Genes that share phenotypes with LINC00588: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00588 Gene

Localization for LINC00588 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00588 Gene

Pathways & Interactions for LINC00588 Gene

SuperPathways for LINC00588 Gene

No Data Available

Interacting Proteins for LINC00588 Gene

Selected Interacting proteins: Q9Y4M8-CH071_HUMAN for LINC00588 Gene via IID UniProtKB

Symbol External ID(s) Details
RBPMS

Gene Ontology (GO) - Biological Process for LINC00588 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00588 Gene

Transcripts for LINC00588 Gene

mRNA/cDNA for LINC00588 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00588 Gene

Long intergenic non-protein coding RNA 588:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00588 Gene

No ASD Table

Relevant External Links for LINC00588 Gene

GeneLoc Exon Structure for
LINC00588
ECgene alternative splicing isoforms for
LINC00588

Expression for LINC00588 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00588 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00588 Gene

This gene is overexpressed in Testis (x40.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC00588 Gene:

LINC00588

SOURCE GeneReport for Unigene cluster for LINC00588 Gene:

Hs.159352
genes like me logo Genes that share expression patterns with LINC00588: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC00588 Gene

Orthologs for LINC00588 Gene

Evolution for LINC00588 Gene

ENSEMBL:
Gene Tree for LINC00588 (if available)
TreeFam:
Gene Tree for LINC00588 (if available)

No data available for Orthologs for LINC00588 Gene

Paralogs for LINC00588 Gene

No data available for Paralogs for LINC00588 Gene

Variants for LINC00588 Gene

Sequence variations from dbSNP and Humsavar for LINC00588 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10094210 -- 57,285,059(+) ttcac(A/G)caaag downstream-variant-500B
rs10504229 -- 57,283,936(+) GCAAG(A/G)TCAAC intron-variant
rs10504230 -- 57,284,591(+) AACAT(C/T)GAAGT nc-transcript-variant
rs111420783 -- 57,280,367(+) CTGCT(C/T)TGCTC nc-transcript-variant
rs111728426 -- 57,284,904(+) AACAC(A/G)GGAAA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for LINC00588 Gene

Variant ID Type Subtype PubMed ID
esv25719 CNV gain+loss 19812545
esv2759618 CNV gain+loss 17122850
nsv1023586 CNV loss 25217958
nsv428200 CNV gain 18775914
nsv824651 CNV gain 20364138
nsv831321 CNV gain+loss 17160897
nsv8354 CNV gain 18304495
nsv951435 CNV deletion 24416366
nsv951436 CNV duplication 24416366

Relevant External Links for LINC00588 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00588

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00588 Gene

Disorders for LINC00588 Gene

Relevant External Links for LINC00588

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00588

No disorders were found for LINC00588 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00588 Gene

Publications for LINC00588 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4 64
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  3. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC00588 Gene

Sources for LINC00588 Gene

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