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Aliases for LINC00583 Gene

Subcategory (RNA class) for LINC00583 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC00583 Gene

  • Long Intergenic Non-Protein Coding RNA 583 2 3 5
  • Chromosome 9 Open Reading Frame 146 2
  • C9orf146 3

External Ids for LINC00583 Gene

Previous HGNC Symbols for LINC00583 Gene

  • C9orf146

Summaries for LINC00583 Gene

GeneCards Summary for LINC00583 Gene

LINC00583 (Long Intergenic Non-Protein Coding RNA 583) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00583 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00583 Gene

Genomics for LINC00583 Gene

GeneHancer (GH) Regulatory Elements for LINC00583 Gene

Promoters and enhancers for LINC00583 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I013898 Enhancer 0.7 Ensembl ENCODE 11.6 -27.8 -27783 3.2 PRDM6 ZNF680 POLR2A GFI1B FEZF1 RAD21 NR2F2 LINC00583 GC09P013806 LOC101929507
GH09I013938 Enhancer 0.9 VISTA ENCODE 0.4 +11.5 11529 1.7 JUND JUN RCOR1 RAD21 LINC00583 PES1P2 LOC101929507
GH09I013940 Enhancer 0.9 Ensembl ENCODE 0.4 +14.3 14319 2.6 JUN CEBPG RAD21 HIC1 FOSL1 ZFHX2 ZNF366 POLR2A ZSCAN5C SMC3 LINC00583 PES1P2 LOC101929507
GH09I013979 Enhancer 0.9 ENCODE 0.2 +51.8 51755 0.8 PKNOX1 INSM2 MZF1 FEZF1 ZNF2 ZNF121 ZNF213 ZNF366 ZSCAN5C SCRT2 ZDHHC21 PES1P2 LINC00583 LOC101929507
GH09I013961 Enhancer 0.4 ENCODE 0.3 +34.1 34095 1.2 SRF FOXA2 PES1P2 LINC00583 LOC101929507
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00583 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00583 Gene

Genomic Locations for LINC00583 Gene
17,640 bases
Plus strand

Genomic View for LINC00583 Gene

Genes around LINC00583 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00583 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00583 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00583 Gene

Proteins for LINC00583 Gene

Post-translational modifications for LINC00583 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00583 Gene

Domains & Families for LINC00583 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00583 Gene

Function for LINC00583 Gene

Phenotypes From GWAS Catalog for LINC00583 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00583 Gene

Localization for LINC00583 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00583 gene
Compartment Confidence
extracellular 3
nucleus 1
cytosol 1
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00583 Gene

Pathways & Interactions for LINC00583 Gene

SuperPathways for LINC00583 Gene

No Data Available

Interacting Proteins for LINC00583 Gene

Gene Ontology (GO) - Biological Process for LINC00583 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC00583 Gene

Drugs & Compounds for LINC00583 Gene

No Compound Related Data Available

Transcripts for LINC00583 Gene

mRNA/cDNA for LINC00583 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00583 Gene

Long intergenic non-protein coding RNA 583:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00583 Gene

No ASD Table

Relevant External Links for LINC00583 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC00583 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00583 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00583 Gene:


SOURCE GeneReport for Unigene cluster for LINC00583 Gene:

genes like me logo Genes that share expression patterns with LINC00583: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00583 Gene

Orthologs for LINC00583 Gene

Evolution for LINC00583 Gene

Gene Tree for LINC00583 (if available)
Gene Tree for LINC00583 (if available)

No data available for Orthologs for LINC00583 Gene

Paralogs for LINC00583 Gene

No data available for Paralogs for LINC00583 Gene

Variants for LINC00583 Gene

Sequence variations from dbSNP and Humsavar for LINC00583 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000047858 -- 13,936,114(+) A/G intron_variant
rs1000309129 -- 13,940,025(+) G/A intron_variant
rs1000316421 -- 13,935,015(+) C/A intron_variant
rs1000332452 -- 13,931,065(+) A/T intron_variant
rs1000546164 -- 13,939,046(+) T/A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00583 Gene

Variant ID Type Subtype PubMed ID
nsv1015319 CNV loss 25217958
nsv1033764 CNV loss 25217958
nsv613635 CNV loss 21841781
nsv613636 CNV loss 21841781

Additional Variant Information for LINC00583 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00583 Gene

Disorders for LINC00583 Gene

Additional Disease Information for LINC00583

No disorders were found for LINC00583 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00583 Gene

Publications for LINC00583 Gene

  1. Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling. (PMID: 19240061) Trynka G … Wijmenga C (Gut 2009) 3 58
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for LINC00583 Gene

Sources for LINC00583 Gene

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