Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC00577 Gene

Subcategory (RNA class) for LINC00577 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for LINC00577 Gene

  • Long Intergenic Non-Protein Coding RNA 577 2 3
  • Chromosome 6 Open Reading Frame 220 2
  • DJ439I14.1 3
  • C6orf220 3

External Ids for LINC00577 Gene

ORGUL Members for LINC00577 Gene

Previous HGNC Symbols for LINC00577 Gene

  • C6orf220

Previous GeneCards Identifiers for LINC00577 Gene

  • GC06M105387

Summaries for LINC00577 Gene

GeneCards Summary for LINC00577 Gene

LINC00577 (Long Intergenic Non-Protein Coding RNA 577) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00577 Gene

Genomics for LINC00577 Gene

Genomic Location for LINC00577 Gene

Start:
104,936,294 bp from pter
End:
104,940,527 bp from pter
Size:
4,234 bases
Orientation:
Minus strand

Genomic View for LINC00577 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC00577 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00577 Gene

No data available for Regulatory Elements for LINC00577 Gene

Proteins for LINC00577 Gene

Post-translational modifications for LINC00577 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00577 Gene

Domains for LINC00577 Gene

Gene Families for LINC00577 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00577: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00577 Gene

Function for LINC00577 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC00577 Gene

Localization for LINC00577 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00577 Gene

Pathways for LINC00577 Gene

SuperPathways for LINC00577 Gene

No Data Available

Interacting Proteins for LINC00577 Gene

Gene Ontology (GO) - Biological Process for LINC00577 Gene

None

No data available for Pathways by source for LINC00577 Gene

Transcripts for LINC00577 Gene

mRNA/cDNA for LINC00577 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00577 Gene

Long intergenic non-protein coding RNA 577:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00577 Gene

No ASD Table

Relevant External Links for LINC00577 Gene

GeneLoc Exon Structure for
LINC00577
ECgene alternative splicing isoforms for
LINC00577

Expression for LINC00577 Gene

mRNA expression in normal human tissues for LINC00577 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00577 Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (7.0), Testis (6.9), Brain - Caudate (basal ganglia) (5.9), Brain - Frontal Cortex (BA9) (4.6), Brain - Cortex (4.5), Brain - Anterior cingulate cortex (BA24) (4.3), and Brain - Nucleus accumbens (basal ganglia) (4.0).

SOURCE GeneReport for Unigene cluster for LINC00577 Gene Hs.649249

genes like me logo Genes that share expressions with LINC00577: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for LINC00577 Gene

Orthologs for LINC00577 Gene

Evolution for LINC00577 Gene

ENSEMBL:
Gene Tree for LINC00577 (if available)
TreeFam:
Gene Tree for LINC00577 (if available)

No data available for Orthologs for LINC00577 Gene

Paralogs for LINC00577 Gene

No data available for Paralogs for LINC00577 Gene

Variants for LINC00577 Gene

Sequence variations from dbSNP and Humsavar for LINC00577 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs1190826 -- 104,941,860(+) TTTTT(A/T)AAAAA upstream-variant-2KB
rs1475120 -- 104,942,078(-) CTTGG(C/T)AACCT upstream-variant-2KB
rs2095812 -- 104,936,103(+) GTGCT(C/G)AATAG downstream-variant-500B
rs2895599 -- 104,937,314(+) AGAGA(C/G)GCGGT intron-variant
rs6913435 -- 104,938,130(+) gtccc(A/G)gccac intron-variant

Relevant External Links for LINC00577 Gene

HapMap Linkage Disequilibrium report
LINC00577

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC00577 Gene

Disorders for LINC00577 Gene

No disorders were found for LINC00577 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for LINC00577 Gene

Publications for LINC00577 Gene

No publications were found for LINC00577 Gene.

Products for LINC00577 Gene

Sources for LINC00577 Gene

Back to Top

Content