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Aliases for LINC00471 Gene

Subcategory (RNA class) for LINC00471 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for LINC00471 Gene

  • Long Intergenic Non-Protein Coding RNA 471 2 3
  • C2orf52 3 4
  • Chromosome 2 Open Reading Frame 52 2

External Ids for LINC00471 Gene

ORGUL Members for LINC00471 Gene

Previous HGNC Symbols for LINC00471 Gene

  • C2orf52

Previous GeneCards Identifiers for LINC00471 Gene

  • GC02M232374

Summaries for LINC00471 Gene

GeneCards Summary for LINC00471 Gene

LINC00471 (Long Intergenic Non-Protein Coding RNA 471) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00471 Gene

Genomics for LINC00471 Gene

Genomic Location for LINC00471 Gene

Start:
231,508,426 bp from pter
End:
231,514,339 bp from pter
Size:
5,914 bases
Orientation:
Minus strand

Genomic View for LINC00471 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC00471 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00471 Gene

No data available for Regulatory Elements for LINC00471 Gene

Proteins for LINC00471 Gene

  • Protein details for LINC00471 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N535-CB052_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00471
    Protein Accession:
    Q8N535
    Secondary Accessions:

    Protein attributes for LINC00471 Gene

    Size:
    108 amino acids
    Molecular mass:
    12106 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00471 Gene

Proteomics data for LINC00471 Gene at MOPED

Post-translational modifications for LINC00471 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00471 Gene

Domains for LINC00471 Gene

Gene Families for LINC00471 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for LINC00471 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00471: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00471 Gene

Function for LINC00471 Gene

Phenotypes for LINC00471 Gene

GenomeRNAi human phenotypes for LINC00471:
genes like me logo Genes that share phenotypes with LINC00471: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC00471 Gene

Localization for LINC00471 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00471 Gene

Pathways for LINC00471 Gene

SuperPathways for LINC00471 Gene

No Data Available

Interacting Proteins for LINC00471 Gene

Gene Ontology (GO) - Biological Process for LINC00471 Gene

None

No data available for Pathways by source for LINC00471 Gene

Transcripts for LINC00471 Gene

mRNA/cDNA for LINC00471 Gene

(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00471 Gene

Long intergenic non-protein coding RNA 471:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00471 Gene

No ASD Table

Relevant External Links for LINC00471 Gene

GeneLoc Exon Structure for
LINC00471
ECgene alternative splicing isoforms for
LINC00471

Expression for LINC00471 Gene

mRNA expression in normal human tissues for LINC00471 Gene

SOURCE GeneReport for Unigene cluster for LINC00471 Gene Hs.375211

genes like me logo Genes that share expressions with LINC00471: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for LINC00471 Gene

Orthologs for LINC00471 Gene

Evolution for LINC00471 Gene

ENSEMBL:
Gene Tree for LINC00471 (if available)
TreeFam:
Gene Tree for LINC00471 (if available)

No data available for Orthologs for LINC00471 Gene

Paralogs for LINC00471 Gene

No data available for Paralogs for LINC00471 Gene

Variants for LINC00471 Gene

Sequence variations from dbSNP and Humsavar for LINC00471 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs4973429 -- 231,513,107(+) CAATA(G/T)CACTT intron-variant
rs4973430 -- 231,513,797(+) TTACT(C/T)ACACC intron-variant
rs4973431 -- 231,513,882(+) ACAAT(C/T)GATAA intron-variant
rs5839405 -- 231,512,722(+) TAGAC(-/T)TTTTT intron-variant
rs6726164 -- 231,516,142(+) CAACT(G/T)CTGGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LINC00471 Gene

Variant ID Type Subtype PubMed ID
nsv834567 CNV Gain 17160897
nsv3203 CNV Loss 18451855
nsv875966 CNV Gain 21882294

Relevant External Links for LINC00471 Gene

HapMap Linkage Disequilibrium report
LINC00471

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC00471 Gene

Disorders for LINC00471 Gene

No disorders were found for LINC00471 Gene.

No data available for UniProtKB/Swiss-Prot for LINC00471 Gene

Publications for LINC00471 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PMID: 23563607) Berndt S.I. … Ingelsson E. (Nat. Genet. 2013) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4

Products for LINC00471 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC00471
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC00471
    • Block miRNA regulation of LINC00471 using miScript Target Protectors

    Sources for LINC00471 Gene

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