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LINC00471 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 471

GCID:
GC02M231508
GIFtS:
26
Genes Participants
UDN Logo

Aliases for LINC00471 Gene

Subcategory (RNA class) for LINC00471 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00471 Gene

  • Long Intergenic Non-Protein Coding RNA 471 2 3 5
  • C2orf52 3 4
  • Chromosome 2 Open Reading Frame 52 2

External Ids for LINC00471 Gene

Previous HGNC Symbols for LINC00471 Gene

  • C2orf52

Previous GeneCards Identifiers for LINC00471 Gene

  • GC02M232374

Summaries for LINC00471 Gene

GeneCards Summary for LINC00471 Gene

LINC00471 (Long Intergenic Non-Protein Coding RNA 471) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00471 Gene

Genomics for LINC00471 Gene

Products:

  1. Regulatory Element

Regulatory Elements for LINC00471 Gene

Enhancers for LINC00471 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G231513 1 ENCODE 26.1 -0.2 -163 2.6 HDGF PKNOX1 ARNT WRNIP1 SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 LINC00471 NMUR1 TEX44 GC02P231518
GH02G231482 0.9 ENCODE 19.6 +31.0 30983 2.1 ARID4B KLF17 SIN3A DMAP1 ZNF2 ZNF48 RAD21 YY1 EGR1 ZNF143 LINC00471 NMUR1 NCL PIR44191
GH02G231602 2 FANTOM5 Ensembl ENCODE dbSUPER 6.4 -90.6 -90619 4.1 HDGF PKNOX1 ATF1 ARNT ARID4B SIN3A BRCA1 GLIS2 ZNF207 SP3 NMUR1 LINC00471 DIS3L2 PTMA GC02P231604 PIR57970
GH02G231611 2 FANTOM5 Ensembl ENCODE dbSUPER 6.3 -99.2 -99194 4.9 HDGF PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 ZNF766 ZNF143 ZNF207 TEX44 NMUR1 LINC00471 PTMA DIS3L2 LOC105373928 RN7SL499P
GH02G231785 1.2 ENCODE 9.9 -272.1 -272131 1.9 AGO1 ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 SP3 NFYC RPL28P2 ENSG00000251485 ENSG00000261096 LINC00471 PDE6D
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC00471 on UCSC Golden Path with GeneCards custom track

Promoters for LINC00471 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000131831 -61 1201 HDGF PKNOX1 ARNT WRNIP1 SIN3A DMAP1 ZNF2 YY1 ZNF207 SP3

Genomic Location for LINC00471 Gene

Chromosome:
2
Start:
231,508,426 bp from pter
End:
231,514,339 bp from pter
Size:
5,914 bases
Orientation:
Minus strand

Genomic View for LINC00471 Gene

Genes around LINC00471 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00471 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00471 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC00471 Gene

Proteins for LINC00471 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for LINC00471 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N535-CB052_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00471
    Protein Accession:
    Q8N535

    Protein attributes for LINC00471 Gene

    Size:
    108 amino acids
    Molecular mass:
    12106 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00471 Gene

Post-translational modifications for LINC00471 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00471 Gene

Domains & Families for LINC00471 Gene

Protein Domains for LINC00471 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00471: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00471 Gene

Function for LINC00471 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for LINC00471 Gene

GenomeRNAi human phenotypes for LINC00471:
genes like me logo Genes that share phenotypes with LINC00471: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00471 Gene

Localization for LINC00471 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00471 Gene

Pathways & Interactions for LINC00471 Gene

SuperPathways for LINC00471 Gene

PathCards logo More details on SuperPathways for LINC00471
No Data Available

Interacting Proteins for LINC00471 Gene

Gene Ontology (GO) - Biological Process for LINC00471 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00471 Gene

Drugs & Compounds for LINC00471 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC00471 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for LINC00471 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00471 Gene

Long intergenic non-protein coding RNA 471:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00471 Gene

No ASD Table

Relevant External Links for LINC00471 Gene

GeneLoc Exon Structure for
LINC00471
ECgene alternative splicing isoforms for
LINC00471

Expression for LINC00471 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00471 Gene

mRNA expression in normal human tissues for LINC00471 Gene
mRNA expression by GTEx for LINC00471 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00471 Gene:

LINC00471

SOURCE GeneReport for Unigene cluster for LINC00471 Gene:

Hs.375211
genes like me logo Genes that share expression patterns with LINC00471: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00471 Gene

Orthologs for LINC00471 Gene

Evolution for LINC00471 Gene

ENSEMBL:
Gene Tree for LINC00471 (if available)
TreeFam:
Gene Tree for LINC00471 (if available)

No data available for Orthologs for LINC00471 Gene

Paralogs for LINC00471 Gene

No data available for Paralogs for LINC00471 Gene

Variants for LINC00471 Gene

Sequence variations from dbSNP and Humsavar for LINC00471 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000106017 -- 231,508,112(+) TCCCA(A/C)GTAGC downstream-variant-500B
rs1000709879 -- 231,509,566(+) GCTCA(A/C)GCCTA intron-variant
rs1000807143 -- 231,515,549(+) AATCA(A/C)CACTC upstream-variant-2KB
rs1000895624 -- 231,511,402(+) AAAGA(C/T)AAGGC intron-variant
rs1001115318 -- 231,511,741(+) TGCCT(C/T)TCAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00471 Gene

Variant ID Type Subtype PubMed ID
nsv3203 CNV deletion 18451855
nsv834567 CNV gain 17160897
nsv999161 CNV gain 25217958

Relevant External Links for LINC00471 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00471

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00471 Gene

Disorders for LINC00471 Gene

Relevant External Links for LINC00471

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00471

No disorders were found for LINC00471 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00471 Gene

Publications for LINC00471 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PMID: 23563607) Berndt S.I. … Ingelsson E. (Nat. Genet. 2013) 3 64
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for LINC00471 Gene

Sources for LINC00471 Gene

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