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LINC00471 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 471

GCID:
GC02M231508
GIFtS:
23
Genes Participants
UDN Logo

Aliases for LINC00471 Gene

Subcategory (RNA class) for LINC00471 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00471 Gene

  • Long Intergenic Non-Protein Coding RNA 471 2 3 5
  • C2orf52 3 4
  • Chromosome 2 Open Reading Frame 52 2

External Ids for LINC00471 Gene

Previous HGNC Symbols for LINC00471 Gene

  • C2orf52

Previous GeneCards Identifiers for LINC00471 Gene

  • GC02M232374

Summaries for LINC00471 Gene

GeneCards Summary for LINC00471 Gene

LINC00471 (Long Intergenic Non-Protein Coding RNA 471) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00471 Gene

Genomics for LINC00471 Gene

Products:

  1. Regulatory Element

Regulatory Elements for LINC00471 Gene

Enhancers for LINC00471 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around LINC00471 on UCSC Golden Path with GeneCards custom track

Promoters for LINC00471 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around LINC00471 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC00471 Gene

Chromosome:
2
Start:
231,508,426 bp from pter
End:
231,514,339 bp from pter
Size:
5,914 bases
Orientation:
Minus strand

Genomic View for LINC00471 Gene

Genes around LINC00471 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00471 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00471 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC00471 Gene

Proteins for LINC00471 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for LINC00471 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N535-CB052_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00471
    Protein Accession:
    Q8N535

    Protein attributes for LINC00471 Gene

    Size:
    108 amino acids
    Molecular mass:
    12106 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00471 Gene

Proteomics data for LINC00471 Gene at MOPED

Post-translational modifications for LINC00471 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00471 Gene

Domains & Families for LINC00471 Gene

Protein Domains for LINC00471 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00471: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00471 Gene

Function for LINC00471 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for LINC00471 Gene

GenomeRNAi human phenotypes for LINC00471:
genes like me logo Genes that share phenotypes with LINC00471: view

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00471 Gene

Localization for LINC00471 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00471 Gene

Pathways & Interactions for LINC00471 Gene

SuperPathways for LINC00471 Gene

PathCards logoMore details on SuperPathways for LINC00471
No Data Available

Interacting Proteins for LINC00471 Gene

Gene Ontology (GO) - Biological Process for LINC00471 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00471 Gene

Drugs & Compounds for LINC00471 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC00471 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for LINC00471 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00471 Gene

Long intergenic non-protein coding RNA 471:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00471 Gene

No ASD Table

Relevant External Links for LINC00471 Gene

GeneLoc Exon Structure for
LINC00471
ECgene alternative splicing isoforms for
LINC00471

Expression for LINC00471 Gene

Products:

  1. Primer

mRNA expression in normal human tissues for LINC00471 Gene

mRNA expression in normal human tissues for LINC00471 Gene
mRNA expression by GTEx for LINC00471 Gene

SOURCE GeneReport for Unigene cluster for LINC00471 Gene Hs.375211

genes like me logo Genes that share expression patterns with LINC00471: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LINC00471 Gene

Orthologs for LINC00471 Gene

Evolution for LINC00471 Gene

ENSEMBL:
Gene Tree for LINC00471 (if available)
TreeFam:
Gene Tree for LINC00471 (if available)

No data available for Orthologs for LINC00471 Gene

Paralogs for LINC00471 Gene

No data available for Paralogs for LINC00471 Gene

Variants for LINC00471 Gene

Sequence variations from dbSNP and Humsavar for LINC00471 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs4973429 -- 231,513,107(+) CAATA(G/T)CACTT intron-variant
rs4973430 -- 231,513,797(+) TTACT(C/T)ACACC intron-variant
rs4973431 -- 231,513,882(+) ACAAT(C/T)GATAA intron-variant
rs6750795 -- 231,513,520(+) ACATA(C/T)AATTA intron-variant
rs5839405 -- 231,512,722(+) TAGAC(-/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00471 Gene

Variant ID Type Subtype PubMed ID
nsv834567 CNV Gain 17160897
nsv3203 CNV Loss 18451855
nsv875966 CNV Gain 21882294

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LINC00471 Gene

Disorders for LINC00471 Gene

Relevant External Links for LINC00471

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC00471

No disorders were found for LINC00471 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00471 Gene

Publications for LINC00471 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 67
  2. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PMID: 23563607) Berndt S.I. … Ingelsson E. (Nat. Genet. 2013) 3

Products for LINC00471 Gene

Sources for LINC00471 Gene

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