Free for academic non-profit institutions. Other users need a Commercial license

LINC00471 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 471

GCID:
GC02M231508
GIFtS:
22
Genes Participants
UDN Logo

Aliases for LINC00471 Gene

Subcategory (RNA class) for LINC00471 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00471 Gene

  • Long Intergenic Non-Protein Coding RNA 471 2 3 5
  • C2orf52 3 4
  • Chromosome 2 Open Reading Frame 52 2

External Ids for LINC00471 Gene

Previous HGNC Symbols for LINC00471 Gene

  • C2orf52

Previous GeneCards Identifiers for LINC00471 Gene

  • GC02M232374

Summaries for LINC00471 Gene

GeneCards Summary for LINC00471 Gene

LINC00471 (Long Intergenic Non-Protein Coding RNA 471) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00471 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00471 Gene

Genomics for LINC00471 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LINC00471 Gene

Promoters and enhancers for LINC00471 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02I231513 Promoter/Enhancer 1.5 Ensembl ENCODE 576.1 -0.2 -162 2.6 HDGF PKNOX1 ATF1 ARNT SIN3A DMAP1 ZNF2 YY1 ETS1 POLR2B LINC00471 NMUR1 TEX44 GC02P231518
GH02I230863 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 13.6 +644.7 644728 11.3 PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 IRF4 ZNF143 SP3 ITM2C RPL28P2 NCL ENSG00000261096 COPS7B LINC00471 ENSG00000230385 SPATA3 SPATA3-AS1 PSMD1
GH02I231785 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.2 -272.1 -272134 1.9 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 ZNF416 ZNF143 ZNF548 COPS7B PDE6D DIS3L2 RPL28P2 NCL GIGYF2 ENSG00000261096 ENSG00000251485 LINC00471 TIGD1
GH02I231482 Promoter/Enhancer 1.3 Ensembl ENCODE 19.6 +31.0 30983 2.1 RB1 ARID4B DMAP1 ZNF2 KLF5 ZNF48 RAD21 YY1 ZNF335 ZNF207 NCL LINC00471 NMUR1 PIR44191
GH02I231462 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 6.8 +49.9 49909 3.8 HDGF HNRNPUL1 PKNOX1 CLOCK SMAD1 MLX ZFP64 ARID4B NEUROD1 SIN3A NCL DIS3L2 RPL28P2 LOC101928816 NMUR1 COPS7B ENSG00000251485 RNU2-22P ENSG00000224376 LINC00471
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00471 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00471 Gene

Genomic Locations for LINC00471 Gene
chr2:231,508,426-231,514,339
(GRCh38/hg38)
Size:
5,914 bases
Orientation:
Minus strand
chr2:232,373,137-232,379,050
(GRCh37/hg19)

Genomic View for LINC00471 Gene

Genes around LINC00471 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00471 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00471 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC00471 Gene

Proteins for LINC00471 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for LINC00471 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N535-CB052_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00471
    Protein Accession:
    Q8N535

    Protein attributes for LINC00471 Gene

    Size:
    108 amino acids
    Molecular mass:
    12106 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00471 Gene

Post-translational modifications for LINC00471 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00471 Gene

Domains & Families for LINC00471 Gene

Protein Domains for LINC00471 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00471: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00471 Gene

Function for LINC00471 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC00471 Gene

Phenotypes for LINC00471 Gene

GenomeRNAi human phenotypes for LINC00471:
genes like me logo Genes that share phenotypes with LINC00471: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00471 Gene

Localization for LINC00471 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00471 Gene

Pathways & Interactions for LINC00471 Gene

SuperPathways for LINC00471 Gene

PathCards logo More details on SuperPathways for LINC00471
No Data Available

Interacting Proteins for LINC00471 Gene

Gene Ontology (GO) - Biological Process for LINC00471 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00471 Gene

Drugs & Compounds for LINC00471 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC00471 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC00471 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00471 Gene

Long intergenic non-protein coding RNA 471:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00471 Gene

No ASD Table

Relevant External Links for LINC00471 Gene

GeneLoc Exon Structure for
LINC00471
ECgene alternative splicing isoforms for
LINC00471

Expression for LINC00471 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00471 Gene

mRNA expression in normal human tissues for LINC00471 Gene
mRNA expression by GTEx for LINC00471 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00471 Gene:

LINC00471

SOURCE GeneReport for Unigene cluster for LINC00471 Gene:

Hs.375211
genes like me logo Genes that share expression patterns with LINC00471: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00471 Gene

Orthologs for LINC00471 Gene

Evolution for LINC00471 Gene

ENSEMBL:
Gene Tree for LINC00471 (if available)
TreeFam:
Gene Tree for LINC00471 (if available)

No data available for Orthologs for LINC00471 Gene

Paralogs for LINC00471 Gene

No data available for Paralogs for LINC00471 Gene

Variants for LINC00471 Gene

Sequence variations from dbSNP and Humsavar for LINC00471 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000106017 -- 231,508,112(-) A/C downstream_transcript_variant
rs1000709879 -- 231,509,566(-) C/A/T intron_variant
rs1000807143 -- 231,515,549(-) C/A upstream_transcript_variant
rs1000895624 -- 231,511,402(-) T/C intron_variant
rs1001115318 -- 231,511,741(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00471 Gene

Variant ID Type Subtype PubMed ID
nsv3203 CNV deletion 18451855
nsv834567 CNV gain 17160897
nsv999161 CNV gain 25217958

Additional Variant Information for LINC00471 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00471

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00471 Gene

Disorders for LINC00471 Gene

Additional Disease Information for LINC00471

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC00471 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00471 Gene

Publications for LINC00471 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PMID: 23563607) Berndt SI … Ingelsson E (Nature genetics 2013) 3 58
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier LW … Wilson RK (Nature 2005) 4 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58

Products for LINC00471 Gene

Sources for LINC00471 Gene

Content
Loading form....