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Aliases for LINC00471 Gene

Subcategory (RNA class) for LINC00471 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC00471 Gene

  • Long Intergenic Non-Protein Coding RNA 471 2 3 5
  • C2orf52 3 4
  • Chromosome 2 Open Reading Frame 52 2

External Ids for LINC00471 Gene

Previous HGNC Symbols for LINC00471 Gene

  • C2orf52

Previous GeneCards Identifiers for LINC00471 Gene

  • GC02M232374

Summaries for LINC00471 Gene

GeneCards Summary for LINC00471 Gene

LINC00471 (Long Intergenic Non-Protein Coding RNA 471) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00471 Gene

Genomics for LINC00471 Gene

Regulatory Elements for LINC00471 Gene

Enhancers for LINC00471 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F231513 0.5 ENCODE 26.1 -0.2 -163 2.6 HDGF PKNOX1 ATF1 ARNT WRNIP1 SIN3A DMAP1 ZNF2 ETS1 YY1 LINC00471 NMUR1 TEX44 GC02P231518
GH02F231482 0.4 ENCODE 19.6 +31.0 30983 2.1 SIN3A ARID4B KLF17 DMAP1 ZNF48 ZNF2 RAD21 YY1 EGR1 ZNF143 LINC00471 NMUR1 NCL PIR44191
GH02F231541 1 Ensembl ENCODE 14.4 -27.4 -27363 0.6 CTCF KLF1 BHLHE40 MAFK LINC00471 NMUR1 RPL21P35
GH02F231522 1.2 Ensembl ENCODE 10.1 -9.6 -9601 2.6 ZNF263 NRF1 BHLHE40 NR2F2 ZNF274 GLIS1 EZH2 SPI1 NMUR1 LINC00471 TEX44 GC02P231518
GH02F231553 1.3 Ensembl ENCODE 9.4 -40.5 -40462 2.1 HDGF ZNF263 ZNF687 NRF1 NR2F2 ZFHX2 POLR2A EGR1 IKZF1 SCRT2 NMUR1 RNU2-22P TEX44 ENSG00000233538 SNORA75 SNORD20 LINC00471 RPL21P35
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LINC00471 on UCSC Golden Path with GeneCards custom track

Promoters for LINC00471 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for LINC00471 Gene

231,508,426 bp from pter
231,514,339 bp from pter
5,914 bases
Minus strand

Genomic View for LINC00471 Gene

Genes around LINC00471 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00471 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00471 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00471 Gene

Proteins for LINC00471 Gene

  • Protein details for LINC00471 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein encoded by LINC00471
    Protein Accession:

    Protein attributes for LINC00471 Gene

    108 amino acids
    Molecular mass:
    12106 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00471 Gene

Post-translational modifications for LINC00471 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00471 Gene

Domains & Families for LINC00471 Gene

Protein Domains for LINC00471 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00471: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00471 Gene

Function for LINC00471 Gene

Phenotypes for LINC00471 Gene

genes like me logo Genes that share phenotypes with LINC00471: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00471 Gene

Localization for LINC00471 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC00471 Gene

Pathways & Interactions for LINC00471 Gene

SuperPathways for LINC00471 Gene

No Data Available

Interacting Proteins for LINC00471 Gene

Gene Ontology (GO) - Biological Process for LINC00471 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC00471 Gene

Transcripts for LINC00471 Gene

mRNA/cDNA for LINC00471 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00471 Gene

Long intergenic non-protein coding RNA 471:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00471 Gene

No ASD Table

Relevant External Links for LINC00471 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC00471 Gene

mRNA expression in normal human tissues for LINC00471 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00471 Gene:


SOURCE GeneReport for Unigene cluster for LINC00471 Gene:

genes like me logo Genes that share expression patterns with LINC00471: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC00471 Gene

Orthologs for LINC00471 Gene

Evolution for LINC00471 Gene

Gene Tree for LINC00471 (if available)
Gene Tree for LINC00471 (if available)

No data available for Orthologs for LINC00471 Gene

Paralogs for LINC00471 Gene

No data available for Paralogs for LINC00471 Gene

Variants for LINC00471 Gene

Sequence variations from dbSNP and Humsavar for LINC00471 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10176987 -- 231,510,900(+) gtgag(G/T)agttc intron-variant
rs10190668 -- 231,515,253(+) ATATT(G/T)TGTGT upstream-variant-2KB
rs10534780 -- 231,514,173(+) CACAC(-/AT)GAGTC nc-transcript-variant
rs10693014 -- 231,513,129(+) GTTTT(G/T)TGTTT intron-variant
rs111305583 -- 231,514,927(+) GCTGT(C/T)GCTGC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LINC00471 Gene

Variant ID Type Subtype PubMed ID
nsv3203 CNV deletion 18451855
nsv834567 CNV gain 17160897
nsv999161 CNV gain 25217958

Relevant External Links for LINC00471 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00471 Gene

Disorders for LINC00471 Gene

Relevant External Links for LINC00471

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for LINC00471 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00471 Gene

Publications for LINC00471 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PMID: 23563607) Berndt S.I. … Ingelsson E. (Nat. Genet. 2013) 3 64
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for LINC00471 Gene

Sources for LINC00471 Gene

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